Summary information of deep learning profile DL0025.1

This page shows the summary of all deep learning-derived profiles and motifs for SRF. Please scroll down the page to browse individual datasets.

Profile summary

Name: SRF
Profile ID: DL0025.1
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCODE
Number of datasets: 12
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

A [ 0.00 0.00 -0.00 -0.00 0.05 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 ]
C [ 0.00 0.00 0.02 0.03 -0.00 0.05 0.00 0.00 0.14 0.19 -0.00 0.01 0.01 0.00 0.01 0.01 ]
G [ 0.00 0.02 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.12 0.05 -0.00 0.00 0.00 0.01 ]
T [ 0.01 0.00 0.01 0.00 -0.00 0.01 0.12 0.14 0.00 -0.00 0.00 -0.00 0.03 0.02 0.01 0.00 ]

Common motifs

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 47663

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4109

12 models found for SRF

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000796.1 SRF ENCSR516SMM HepG2 Homo sapiens MA0083.3
BP000797.1 SRF ENCSR582IAO K562 Homo sapiens MA0083.3
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