Detailed information of deep learning profile BP001347.1

This page shows detailed deep learning-derived predictions and motifs for ZNF549 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF549
Model ID: BP001347.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1728.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q6P9A3  
Source: ENCSR545ACM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.01 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

A [ 20 8 23 22 9 20 23 10 6 5 57 7 3 44 60 5 19 8 2 3 1 58 0 0 46 10 17 10 24 28 23 25 21 11 20 22 20 32 12 22 16 17 13 21 15 23 14 25 16 26 ]
C [ 9 15 16 14 40 24 9 11 7 42 3 4 17 14 4 52 16 1 3 5 67 5 1 70 9 37 23 29 19 8 9 13 20 24 20 13 11 15 13 17 15 11 22 12 25 10 17 18 6 18 ]
G [ 24 25 21 22 9 13 13 24 9 4 5 31 38 8 6 2 1 63 56 63 5 1 71 3 3 9 13 21 11 27 28 24 20 26 20 13 32 14 35 21 33 30 13 21 20 27 26 14 28 17 ]
T [ 20 25 13 15 15 16 28 28 51 22 8 31 15 7 3 14 37 1 12 2 0 9 1 0 15 17 20 13 19 10 13 11 12 12 13 25 10 12 13 13 9 15 25 19 13 13 16 16 23 12 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 -0.01 0.00 0.01 -0.00 -0.00 -0.00 -0.01 -0.00 -0.01 0.01 -0.00 -0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.01 0.01 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 ]
G [ -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.01 -0.00 -0.00 0.01 -0.00 0.01 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.01 0.00 -0.00 -0.00 -0.01 -0.00 0.00 -0.01 -0.00 -0.01 -0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 881

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 357

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 116

1 profiles found for the same TF (ZNF549) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001346.1 ZNF549 ENCSR185QFX HEK293 Homo sapiens MA1728.2
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