Detailed information of deep learning profile BP001346.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF549 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF549
Model ID: BP001346.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1728.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q6P9A3  
Source: ENCSR185QFX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.06 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 0.08 -0.00 -0.00 0.05 -0.00 0.01 0.00 0.00 ]
G [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 -0.00 -0.00 0.05 0.06 0.05 -0.00 0.00 0.06 -0.00 0.00 -0.00 -0.00 -0.00 ]
T [ -0.00 0.00 0.00 0.01 0.03 0.00 -0.00 0.02 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 541 495 430 449 814 477 425 837 839 744 466 868 725 398 667 936 224 120 98 1980 180 173 1151 1458 197 550 389 42 202 38 1790 66 70 1132 294 415 453 675 718 719 692 538 533 807 605 699 778 517 697 517 ]
C [ 351 369 422 434 347 351 682 405 365 352 458 362 292 728 495 148 247 246 1369 20 68 341 285 56 793 465 19 17 133 1997 49 44 1784 387 778 802 767 508 298 400 447 642 646 343 398 351 333 352 382 299 ]
G [ 359 408 420 696 420 738 375 331 427 449 565 434 598 404 492 171 489 199 44 36 553 1178 386 306 78 64 1534 1933 1696 8 81 1901 83 161 342 201 359 375 638 472 491 386 457 520 600 607 523 745 532 749 ]
T [ 805 784 784 477 475 490 574 483 425 511 567 392 441 526 402 801 1096 1491 545 20 1255 364 234 236 988 977 114 64 25 13 136 45 119 376 642 638 477 498 402 465 426 490 420 386 453 399 422 442 445 491 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.06 0.00 -0.01 0.01 0.03 -0.00 0.01 0.01 -0.03 0.01 -0.00 0.04 -0.01 -0.01 0.03 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.00 0.01 0.00 0.05 -0.01 -0.01 0.03 0.03 -0.01 0.04 0.04 -0.00 0.02 0.03 0.08 0.02 0.01 0.06 0.01 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.00 0.02 0.01 -0.01 0.00 0.03 0.03 0.03 0.03 -0.00 -0.01 0.06 0.06 0.05 -0.02 0.03 0.07 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.01 0.02 0.02 0.03 0.03 -0.02 0.03 0.02 -0.00 0.01 0.03 0.02 -0.01 0.01 -0.03 -0.00 -0.02 -0.01 0.00 -0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 515

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 172

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF549) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001347.1 ZNF549 ENCSR545ACM HepG2 Homo sapiens MA1728.2
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