Detailed information of deep learning profile BP001346.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF549 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF549
Model ID: BP001346.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1728.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q6P9A3  
Source: ENCSR185QFX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.02 -0.00 0.00 0.03 0.01 0.00 0.00 -0.00 ]
C [ -0.00 -0.00 -0.00 0.00 -0.00 0.06 0.00 -0.00 0.05 0.06 0.05 -0.00 -0.00 0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.01 -0.00 0.05 -0.00 -0.00 0.08 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.06 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 491 445 442 422 399 453 386 420 490 426 465 402 498 477 638 642 376 119 45 136 13 25 64 114 977 988 236 234 364 1255 20 545 1491 1096 801 402 526 441 392 567 511 425 483 574 490 475 477 784 784 805 ]
C [ 749 532 745 523 607 600 520 457 386 491 472 638 375 359 201 342 161 83 1901 81 8 1696 1933 1534 64 78 306 386 1178 553 36 44 199 489 171 492 404 598 434 565 449 427 331 375 738 420 696 420 408 359 ]
G [ 299 382 352 333 351 398 343 646 642 447 400 298 508 767 802 778 387 1784 44 49 1997 133 17 19 465 793 56 285 341 68 20 1369 246 247 148 495 728 292 362 458 352 365 405 682 351 347 434 422 369 351 ]
T [ 517 697 517 778 699 605 807 533 538 692 719 718 675 453 415 294 1132 70 66 1790 38 202 42 389 550 197 1458 1151 173 180 1980 98 120 224 936 667 398 725 868 466 744 839 837 425 477 814 449 430 495 541 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 -0.01 0.00 -0.01 -0.02 -0.00 -0.03 0.01 -0.01 0.02 0.03 0.01 -0.00 0.02 0.03 -0.02 0.03 0.03 0.02 0.02 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.07 0.03 -0.02 0.05 0.06 0.06 -0.01 -0.00 0.03 0.03 0.03 0.03 0.00 -0.01 0.01 0.02 0.00 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.02 0.02 0.02 0.01 0.06 0.01 0.02 0.08 0.03 0.02 -0.00 0.04 0.04 -0.01 0.03 0.03 -0.01 -0.01 0.05 0.00 0.01 0.00 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.03 -0.01 -0.01 0.04 -0.00 0.01 -0.03 0.01 0.01 -0.00 0.03 0.01 -0.01 0.00 0.06 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 515

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 172

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF549) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001347.1 ZNF549 ENCSR545ACM HepG2 Homo sapiens MA1728.2
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