Detailed information of deep learning profile BP001305.1

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This page shows detailed deep learning-derived predictions and motifs for EBF1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EBF1
Model ID: BP001305.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: Early B-Cell Factor-related factors
JASPAR ID: MA0154.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q07802  
Source: ENCSR000DZQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 -0.00 0.02 0.00 -0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 0.00 0.00 0.14 0.09 0.13 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.10 0.05 0.13 0.02 0.00 -0.00 -0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.00 0.05 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.00 ]

Frequency matrix

       
A [ 5096 5220 5149 5014 5358 5375 5301 5171 5166 5532 5425 5350 5172 5516 5388 4824 8576 9955 2794 524 9 110 9 7042 8184 1771 8786 15 10174 4679 4875 5293 5258 5706 5287 5290 5166 5083 5216 5174 5211 5450 5142 5282 5450 5468 5232 5153 5268 5284 ]
C [ 5657 5562 5399 5501 5188 5072 4896 4926 5019 5085 5323 5866 5721 5612 5125 5947 3672 1925 4553 1869 21177 19529 21162 7463 1285 94 51 62 1093 8183 6512 4622 5014 4480 4726 4935 4847 5056 5049 5260 5506 5539 5531 5400 5300 5228 4971 4947 4924 5128 ]
G [ 5013 4914 5086 5344 5424 5446 5740 5803 5525 5318 5302 4656 4949 4881 4994 5234 3921 4859 7038 463 4 0 0 404 5335 18941 11159 21037 8542 5339 2419 4060 6178 5637 5715 5899 5961 5337 5280 5081 5061 4906 5187 5086 5242 5297 5715 5828 5704 5456 ]
T [ 5424 5494 5556 5331 5220 5297 5253 5290 5480 5255 5140 5318 5348 5181 5683 5186 5022 4452 6806 18335 1 1552 20 6282 6387 385 1195 77 1382 2990 7385 7216 4741 5368 5463 5067 5217 5715 5646 5676 5413 5296 5331 5423 5199 5198 5273 5263 5295 5323 ]

Hypothetical CWM

   
A [ 0.00 0.02 0.03 -0.01 -0.03 -0.04 -0.05 -0.05 0.01 0.02 -0.00 0.02 -0.07 0.04 0.01 0.00 0.01 0.00 ]
C [ 0.01 -0.00 -0.02 0.01 0.04 0.14 0.10 0.13 0.03 0.00 -0.03 -0.06 -0.02 -0.03 0.03 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 -0.03 -0.03 -0.06 -0.04 -0.01 0.02 0.11 0.09 0.13 0.04 0.02 -0.01 -0.00 0.01 ]
T [ 0.00 0.01 0.00 0.01 0.05 -0.06 0.03 -0.01 0.02 0.02 -0.04 -0.04 -0.04 -0.03 -0.02 0.02 0.02 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4466

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2300

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1554

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1022

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 845

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 496

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 336

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 20

CWM

PFM

     

HCWM

1 profiles found for the same TF (EBF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001304.1 EBF1 ENCSR000BGU GM12878 Homo sapiens MA0154.5
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