Detailed information of deep learning profile BP001304.1

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This page shows detailed deep learning-derived predictions and motifs for EBF1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EBF1
Model ID: BP001304.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: Early B-Cell Factor-related factors
JASPAR ID: MA0154.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q07802  
Source: ENCSR000BGU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.04 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 0.00 0.02 0.12 0.05 0.10 0.00 -0.00 0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.12 0.09 0.12 0.00 0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 3157 3162 3172 3285 3133 3104 3298 3204 3182 3090 3308 3182 3373 3105 3050 3156 3243 2816 4316 4553 1488 505 7 298 43 4419 3632 17 451 1 11214 3960 2834 3042 3080 3480 3146 3128 3138 3098 3229 3205 3115 3132 3085 3012 3171 3250 3271 3141 ]
C [ 3451 3400 3458 3438 3203 3246 3143 3219 3026 3265 3174 3280 3333 3797 3719 3640 3535 3911 2459 1391 3289 4775 12885 7796 12392 2359 182 0 0 4 378 4613 3148 2480 3281 2995 2984 3003 2977 3319 3270 3358 3546 3482 3422 3350 3288 3180 3099 3125 ]
G [ 3225 3205 3225 3134 3337 3403 3398 3445 3537 3475 3255 3338 3139 2995 2966 2934 2827 3124 2823 4191 5361 464 7 6 13 633 5905 12871 12442 12894 948 2877 1181 2263 3770 3267 3606 3701 3571 3426 3116 3160 3137 3111 3125 3264 3365 3341 3396 3548 ]
T [ 3067 3133 3045 3043 3227 3147 3061 3032 3155 3070 3163 3100 3055 3003 3165 3170 3295 3049 3302 2765 2762 7156 1 4800 452 5489 3181 12 7 1 360 1450 5737 5115 2769 3157 3163 3067 3213 3056 3284 3176 3101 3174 3267 3273 3075 3128 3133 3085 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.02 -0.02 -0.03 -0.04 -0.04 -0.04 0.01 0.01 -0.01 0.02 -0.06 0.04 0.01 -0.00 0.00 0.00 ]
C [ 0.01 -0.00 -0.01 0.02 0.04 0.12 0.09 0.10 0.02 -0.01 -0.03 -0.04 -0.02 -0.02 0.03 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 -0.02 -0.03 -0.05 -0.02 0.00 0.04 0.12 0.10 0.12 0.04 0.01 -0.01 -0.00 0.01 ]
T [ 0.00 0.00 -0.00 0.00 0.03 -0.06 0.02 -0.01 0.02 0.01 -0.05 -0.05 -0.04 -0.03 -0.02 0.02 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2392

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2377

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1766

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 646

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 22

CWM

PFM

     

HCWM

1 profiles found for the same TF (EBF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001305.1 EBF1 ENCSR000DZQ GM12878 Homo sapiens MA0154.5
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