Detailed information of deep learning profile BP001305.1

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This page shows detailed deep learning-derived predictions and motifs for EBF1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EBF1
Model ID: BP001305.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: Early B-Cell Factor-related factors
JASPAR ID: MA0154.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q07802  
Source: ENCSR000DZQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.05 0.00 -0.00 0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 0.00 0.02 0.13 0.05 0.10 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.13 0.09 0.14 0.00 0.00 -0.00 -0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.02 -0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.01 -0.00 ]

Frequency matrix

       
A [ 5323 5295 5263 5273 5198 5199 5423 5331 5296 5413 5676 5646 5715 5217 5067 5463 5368 4741 7216 7385 2990 1382 77 1195 385 6387 6282 20 1552 1 18335 6806 4452 5022 5186 5683 5181 5348 5318 5140 5255 5480 5290 5253 5297 5220 5331 5556 5494 5424 ]
C [ 5456 5704 5828 5715 5297 5242 5086 5187 4906 5061 5081 5280 5337 5961 5899 5715 5637 6178 4060 2419 5339 8542 21037 11159 18941 5335 404 0 0 4 463 7038 4859 3921 5234 4994 4881 4949 4656 5302 5318 5525 5803 5740 5446 5424 5344 5086 4914 5013 ]
G [ 5128 4924 4947 4971 5228 5300 5400 5531 5539 5506 5260 5049 5056 4847 4935 4726 4480 5014 4622 6512 8183 1093 62 51 94 1285 7463 21162 19529 21177 1869 4553 1925 3672 5947 5125 5612 5721 5866 5323 5085 5019 4926 4896 5072 5188 5501 5399 5562 5657 ]
T [ 5284 5268 5153 5232 5468 5450 5282 5142 5450 5211 5174 5216 5083 5166 5290 5287 5706 5258 5293 4875 4679 10174 15 8786 1771 8184 7042 9 110 9 524 2794 9955 8576 4824 5388 5516 5172 5350 5425 5532 5166 5171 5301 5375 5358 5014 5149 5220 5096 ]

Hypothetical CWM

   
A [ 0.00 0.02 0.02 -0.02 -0.03 -0.04 -0.04 -0.04 0.02 0.02 -0.01 0.03 -0.06 0.05 0.01 0.00 0.01 0.00 ]
C [ 0.01 -0.00 -0.01 0.02 0.04 0.13 0.09 0.11 0.02 -0.01 -0.04 -0.06 -0.03 -0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.03 -0.03 -0.02 -0.06 -0.03 0.00 0.03 0.13 0.10 0.14 0.04 0.01 -0.02 -0.00 0.01 ]
T [ 0.00 0.01 0.00 0.01 0.04 -0.07 0.02 -0.00 0.02 0.01 -0.05 -0.05 -0.04 -0.03 -0.01 0.03 0.02 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4466

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2300

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1554

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1022

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 845

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 496

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 336

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 20

CWM

PFM

     

HCWM

1 profiles found for the same TF (EBF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001304.1 EBF1 ENCSR000BGU GM12878 Homo sapiens MA0154.5
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