Detailed information of deep learning profile BP001304.1

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This page shows detailed deep learning-derived predictions and motifs for EBF1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EBF1
Model ID: BP001304.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: Early B-Cell Factor-related factors
JASPAR ID: MA0154.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q07802  
Source: ENCSR000BGU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 0.00 0.00 0.12 0.09 0.12 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 0.00 -0.00 0.00 0.10 0.05 0.12 0.02 0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.04 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 3085 3133 3128 3075 3273 3267 3174 3101 3176 3284 3056 3213 3067 3163 3157 2769 5115 5737 1450 360 1 7 12 3181 5489 452 4800 1 7156 2762 2765 3302 3049 3295 3170 3165 3003 3055 3100 3163 3070 3155 3032 3061 3147 3227 3043 3045 3133 3067 ]
C [ 3548 3396 3341 3365 3264 3125 3111 3137 3160 3116 3426 3571 3701 3606 3267 3770 2263 1181 2877 948 12894 12442 12871 5905 633 13 6 7 464 5361 4191 2823 3124 2827 2934 2966 2995 3139 3338 3255 3475 3537 3445 3398 3403 3337 3134 3225 3205 3225 ]
G [ 3125 3099 3180 3288 3350 3422 3482 3546 3358 3270 3319 2977 3003 2984 2995 3281 2480 3148 4613 378 4 0 0 182 2359 12392 7796 12885 4775 3289 1391 2459 3911 3535 3640 3719 3797 3333 3280 3174 3265 3026 3219 3143 3246 3203 3438 3458 3400 3451 ]
T [ 3141 3271 3250 3171 3012 3085 3132 3115 3205 3229 3098 3138 3128 3146 3480 3080 3042 2834 3960 11214 1 451 17 3632 4419 43 298 7 505 1488 4553 4316 2816 3243 3156 3050 3105 3373 3182 3308 3090 3182 3204 3298 3104 3133 3285 3172 3162 3157 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.02 -0.02 -0.03 -0.04 -0.05 -0.05 0.01 0.02 -0.01 0.02 -0.06 0.03 0.00 -0.00 0.00 0.00 ]
C [ 0.01 -0.00 -0.01 0.01 0.04 0.12 0.10 0.12 0.04 0.00 -0.02 -0.05 -0.03 -0.02 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.03 -0.02 -0.02 -0.04 -0.03 -0.01 0.02 0.10 0.09 0.12 0.04 0.02 -0.01 -0.00 0.01 ]
T [ 0.00 0.00 -0.00 0.01 0.04 -0.06 0.02 -0.01 0.01 0.01 -0.04 -0.04 -0.04 -0.03 -0.02 0.02 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2392

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2377

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1766

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 646

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 22

CWM

PFM

     

HCWM

1 profiles found for the same TF (EBF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001305.1 EBF1 ENCSR000DZQ GM12878 Homo sapiens MA0154.5
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