Detailed information of deep learning profile BP001273.1

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This page shows detailed deep learning-derived predictions and motifs for SP4 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SP4
Model ID: BP001273.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0685.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02446  
Source: ENCSR642PQK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.01 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.02 0.02 0.00 0.02 0.01 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1369 1441 1462 1475 1469 1428 1354 1320 1380 1345 1230 1319 1110 1565 3006 2053 990 1475 1 2 422 12 1 1693 994 677 753 1897 1525 1378 1338 1079 1287 1434 1391 1428 1379 1460 1332 1359 1355 1343 1356 1396 1357 1325 1362 1387 1336 1311 ]
C [ 2720 2508 2612 2545 2643 2598 2630 2652 2773 3170 2944 2831 2517 2744 1973 1390 260 9 8 7 8210 4 36 90 828 7009 4555 1623 2503 2422 2496 2973 2665 2585 2511 2549 2655 2804 2731 2656 2838 2861 2791 2801 2745 2852 2754 2789 2771 2732 ]
G [ 3654 3731 3674 3692 3632 3787 3812 3822 3753 3479 3939 3866 4262 3531 2873 4962 6150 7497 8974 8974 11 8966 7896 6713 6762 363 1663 2945 4001 4265 4222 3947 3876 3877 3926 3826 3706 3412 3684 3693 3563 3529 3483 3457 3486 3448 3472 3473 3510 3508 ]
T [ 1240 1303 1235 1271 1239 1170 1187 1189 1077 989 870 967 1094 1143 1131 578 1583 2 0 0 340 1 1050 487 399 934 2012 2518 954 918 927 984 1155 1087 1155 1180 1243 1307 1236 1274 1227 1250 1353 1329 1395 1358 1395 1334 1366 1432 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 0.00 -0.01 -0.01 -0.00 -0.01 -0.01 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.00 -0.01 -0.00 0.01 0.00 -0.00 -0.00 0.00 ]
G [ -0.00 0.00 0.00 0.00 0.01 0.02 0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.01 -0.01 -0.01 -0.00 -0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2322

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 663

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 296

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 208

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 206

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 64

CWM

PFM

     

HCWM

1 profiles found for the same TF (SP4) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001272.1 SP4 ENCSR000BQV H1 Homo sapiens MA0685.2
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