Detailed information of deep learning profile BP001271.1

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This page shows detailed deep learning-derived predictions and motifs for TP53 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TP53
Model ID: BP001271.1
Cell line/tissue: HepG2
Class: p53 domain factors
Family: p53-related factors
JASPAR ID: MA0106.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04637  
Source: ENCSR980EGJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.01 0.00 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 0.00 0.03 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.00 -0.00 0.02 0.03 0.02 -0.00 -0.00 0.00 0.10 -0.00 -0.00 -0.00 0.02 0.02 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.00 -0.00 0.08 -0.00 0.00 -0.00 0.01 0.03 0.01 0.00 0.00 -0.00 0.08 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.03 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 -0.00 0.01 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 167 174 162 201 153 171 133 159 156 122 196 141 176 167 110 195 119 281 28 347 139 10 37 48 51 287 140 453 0 508 75 7 27 62 59 173 144 197 169 181 180 126 213 200 185 183 136 156 148 140 ]
C [ 154 160 178 174 177 193 213 143 162 197 181 240 178 160 178 87 53 73 524 86 23 11 423 485 393 71 6 0 669 24 24 1 364 462 330 147 209 147 178 173 166 158 152 161 125 157 155 165 195 194 ]
G [ 213 199 167 145 211 163 165 167 213 190 137 136 158 210 245 253 394 254 38 62 55 638 24 40 66 245 500 204 1 17 8 661 6 15 83 209 189 197 180 133 197 248 148 150 141 174 175 154 179 183 ]
T [ 136 137 163 150 129 143 159 201 139 161 156 153 158 133 137 135 104 62 80 175 453 11 186 97 160 67 24 13 0 121 563 1 273 131 198 141 128 129 143 183 127 138 157 159 219 156 204 195 148 153 ]

Hypothetical CWM

   
A [ 0.01 -0.00 0.00 0.01 0.03 -0.02 0.03 0.01 -0.00 -0.01 -0.00 -0.01 0.01 0.02 0.04 -0.02 0.04 0.01 0.01 -0.01 -0.00 -0.01 0.00 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.01 -0.03 0.06 -0.02 0.01 -0.03 0.04 0.04 0.04 0.01 -0.01 -0.06 0.10 -0.03 0.01 -0.03 0.04 0.03 0.03 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.03 -0.02 0.01 -0.02 0.08 -0.04 -0.00 0.01 0.05 0.04 0.05 -0.03 0.02 -0.03 0.08 -0.04 -0.01 0.01 0.02 0.01 0.01 ]
T [ -0.00 0.00 -0.01 0.00 -0.01 0.01 0.00 0.03 -0.02 0.04 0.01 0.01 -0.01 -0.00 -0.01 -0.00 0.01 0.04 -0.03 0.04 0.01 0.00 -0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 542

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 237

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 230

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 198

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 162

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 117

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 110

CWM

PFM

     

HCWM

1 profiles found for the same TF (TP53) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001270.1 TP53 ENCSR760GZL WTC11 Homo sapiens MA0106.3
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