Detailed information of deep learning profile BP001270.1

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This page shows detailed deep learning-derived predictions and motifs for TP53 in WTC11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TP53
Model ID: BP001270.1
Cell line/tissue: WTC11
Class: p53 domain factors
Family: p53-related factors
JASPAR ID: MA0106.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04637  
Source: ENCSR760GZL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.06 -0.00 0.00 0.00 0.02 0.03 0.01 0.00 0.00 -0.00 0.04 0.00 0.00 -0.00 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.02 0.01 0.00 0.00 -0.00 0.06 0.00 0.00 -0.00 0.01 0.02 0.01 0.00 0.00 -0.00 0.03 0.00 -0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 21 25 40 37 22 57 25 22 22 38 40 31 23 19 33 37 23 61 0 138 20 0 1 6 7 62 15 65 1 115 59 13 14 21 36 29 37 27 26 35 45 40 47 37 35 28 29 29 35 37 ]
C [ 45 55 45 57 61 26 40 36 65 49 30 50 41 38 53 16 5 1 158 2 2 0 103 146 89 7 8 2 152 9 7 4 76 102 71 61 41 33 41 43 54 39 33 32 36 48 47 43 38 52 ]
G [ 58 51 28 22 43 32 66 38 37 31 47 40 36 64 36 83 120 94 0 2 2 159 1 0 6 82 134 88 6 5 15 137 10 7 20 38 47 64 52 46 44 50 47 56 39 36 52 46 35 36 ]
T [ 35 28 46 43 33 44 28 63 35 41 42 38 59 38 37 23 11 3 1 17 135 0 54 7 57 8 2 4 0 30 78 5 59 29 32 31 34 35 40 35 16 30 32 34 49 47 31 41 51 34 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.02 0.02 0.00 -0.02 -0.02 -0.01 -0.01 0.00 -0.01 0.01 -0.01 0.02 0.00 -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.02 0.06 -0.03 0.00 -0.01 0.03 0.03 0.02 0.00 0.01 -0.01 0.04 -0.01 0.00 -0.01 0.01 0.01 0.01 0.01 0.00 ]
G [ -0.00 0.01 0.01 0.01 0.02 0.02 -0.01 0.01 -0.03 0.06 -0.01 0.01 0.01 0.02 0.03 0.02 -0.01 0.00 -0.01 0.04 -0.01 0.00 -0.00 0.01 0.01 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.00 0.00 0.03 -0.02 0.02 -0.01 0.00 -0.01 -0.01 -0.01 -0.01 -0.00 0.01 -0.01 0.01 -0.00 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1709

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 622

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 446

CWM

PFM

     

HCWM

1 profiles found for the same TF (TP53) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001271.1 TP53 ENCSR980EGJ HepG2 Homo sapiens MA0106.3
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