Detailed information of deep learning profile BP001271.1

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This page shows detailed deep learning-derived predictions and motifs for TP53 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TP53
Model ID: BP001271.1
Cell line/tissue: HepG2
Class: p53 domain factors
Family: p53-related factors
JASPAR ID: MA0106.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04637  
Source: ENCSR980EGJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 0.01 -0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.03 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.08 -0.00 0.00 0.00 0.01 0.03 0.01 -0.00 0.00 -0.00 0.08 -0.00 0.00 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.02 -0.00 -0.00 -0.00 0.10 0.00 -0.00 -0.00 0.02 0.03 0.02 -0.00 0.00 -0.00 0.06 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.03 0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 0.01 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 153 148 195 204 156 219 159 157 138 127 183 143 129 128 141 198 131 273 1 563 121 0 13 24 67 160 97 186 11 453 175 80 62 104 135 137 133 158 153 156 161 139 201 159 143 129 150 163 137 136 ]
C [ 183 179 154 175 174 141 150 148 248 197 133 180 197 189 209 83 15 6 661 8 17 1 204 500 245 66 40 24 638 55 62 38 254 394 253 245 210 158 136 137 190 213 167 165 163 211 145 167 199 213 ]
G [ 194 195 165 155 157 125 161 152 158 166 173 178 147 209 147 330 462 364 1 24 24 669 0 6 71 393 485 423 11 23 86 524 73 53 87 178 160 178 240 181 197 162 143 213 193 177 174 178 160 154 ]
T [ 140 148 156 136 183 185 200 213 126 180 181 169 197 144 173 59 62 27 7 75 508 0 453 140 287 51 48 37 10 139 347 28 281 119 195 110 167 176 141 196 122 156 159 133 171 153 201 162 174 167 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.00 0.00 0.01 0.04 -0.03 0.04 0.01 -0.00 -0.01 -0.00 -0.01 0.01 0.01 0.04 -0.02 0.03 0.00 0.01 -0.01 0.00 -0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.02 0.01 -0.01 -0.04 0.08 -0.03 0.02 -0.03 0.05 0.04 0.05 0.01 -0.00 -0.04 0.08 -0.02 0.01 -0.02 0.03 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.03 0.03 0.04 -0.03 0.01 -0.03 0.10 -0.06 -0.01 0.01 0.04 0.04 0.04 -0.03 0.01 -0.02 0.06 -0.03 -0.01 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.00 -0.01 -0.00 -0.01 0.01 0.01 0.04 -0.02 0.04 0.02 0.01 -0.01 -0.00 -0.01 -0.00 0.01 0.03 -0.02 0.03 0.01 0.00 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 542

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 237

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 230

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 198

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 162

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 117

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 110

CWM

PFM

     

HCWM

1 profiles found for the same TF (TP53) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001270.1 TP53 ENCSR760GZL WTC11 Homo sapiens MA0106.3
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