Detailed information of deep learning profile BP001270.1

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This page shows detailed deep learning-derived predictions and motifs for TP53 in WTC11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TP53
Model ID: BP001270.1
Cell line/tissue: WTC11
Class: p53 domain factors
Family: p53-related factors
JASPAR ID: MA0106.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04637  
Source: ENCSR760GZL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.03 -0.00 0.00 0.00 0.01 0.02 0.01 -0.00 0.00 0.00 0.06 -0.00 0.00 0.00 0.01 0.02 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 -0.00 0.00 0.00 0.04 -0.00 0.00 0.00 0.01 0.03 0.02 0.00 0.00 -0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.02 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 34 51 41 31 47 49 34 32 30 16 35 40 35 34 31 32 29 59 5 78 30 0 4 2 8 57 7 54 0 135 17 1 3 11 23 37 38 59 38 42 41 35 63 28 44 33 43 46 28 35 ]
C [ 36 35 46 52 36 39 56 47 50 44 46 52 64 47 38 20 7 10 137 15 5 6 88 134 82 6 0 1 159 2 2 0 94 120 83 36 64 36 40 47 31 37 38 66 32 43 22 28 51 58 ]
G [ 52 38 43 47 48 36 32 33 39 54 43 41 33 41 61 71 102 76 4 7 9 152 2 8 7 89 146 103 0 2 2 158 1 5 16 53 38 41 50 30 49 65 36 40 26 61 57 45 55 45 ]
T [ 37 35 29 29 28 35 37 47 40 45 35 26 27 37 29 36 21 14 13 59 115 1 65 15 62 7 6 1 0 20 138 0 61 23 37 33 19 23 31 40 38 22 22 25 57 22 37 40 25 21 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.00 0.01 -0.01 0.01 -0.00 -0.01 -0.01 -0.01 -0.01 0.00 -0.01 0.02 -0.02 0.03 0.00 -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 0.00 ]
C [ 0.01 0.01 -0.00 0.00 -0.01 0.04 -0.01 0.00 -0.01 0.02 0.03 0.02 0.01 0.01 -0.01 0.06 -0.03 0.01 -0.01 0.02 0.02 0.01 0.01 0.01 -0.00 ]
G [ 0.00 0.01 0.01 0.01 0.01 -0.01 0.00 -0.01 0.04 -0.01 0.01 0.00 0.02 0.03 0.03 -0.01 0.00 -0.03 0.06 -0.02 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.00 0.00 0.02 -0.01 0.01 -0.01 0.00 -0.01 -0.01 -0.02 -0.02 0.00 0.02 -0.02 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1709

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 622

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 446

CWM

PFM

     

HCWM

1 profiles found for the same TF (TP53) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001271.1 TP53 ENCSR980EGJ HepG2 Homo sapiens MA0106.3
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