Detailed information of deep learning profile BP001252.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF8 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF8
Model ID: BP001252.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA1718.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17098  
Source: ENCSR325QLX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.07 -0.00 0.02 -0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 0.01 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 -0.00 0.00 0.04 0.01 -0.00 0.00 -0.00 0.01 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.03 -0.00 0.08 0.08 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 0.00 0.02 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.00 0.03 -0.00 0.01 0.00 0.01 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2942 3170 2578 1841 5274 3403 1114 1472 1561 5081 1020 5411 5757 5852 1037 6081 5858 6141 4473 316 1163 79 28 30 8 7624 295 5635 147 3263 562 6717 499 5489 1005 4175 5605 764 1229 1121 6083 5399 802 6024 680 897 5915 672 1270 887 ]
C [ 618 849 865 608 526 1755 692 448 576 477 626 582 557 441 1793 425 623 754 1696 467 430 420 14 23 215 35 3581 110 1038 3831 2900 236 2772 227 5191 2449 492 743 386 421 421 471 559 430 3906 567 542 1734 603 4958 ]
G [ 3222 1441 1177 4195 1152 1226 762 4841 4776 910 619 784 666 756 3359 491 699 525 235 297 5980 92 7539 7627 2 10 138 1832 157 379 95 235 633 1275 209 451 909 636 5557 5533 623 1087 386 571 580 429 481 547 2248 492 ]
T [ 912 2234 3074 1050 742 1310 5126 933 781 1226 5429 917 714 645 1505 697 514 274 1290 6614 121 7103 113 14 7469 25 3680 117 6352 221 4137 506 3790 703 1289 619 688 5551 522 619 567 737 5947 669 2528 5801 756 4741 3573 1357 ]

Hypothetical CWM

   
A [ 0.01 -0.00 0.01 -0.00 -0.02 0.01 -0.03 -0.03 -0.01 -0.05 0.07 -0.01 0.03 -0.01 0.00 0.01 0.03 0.00 -0.00 ]
C [ 0.00 0.01 0.02 0.03 0.01 0.02 0.05 -0.01 -0.02 0.04 -0.04 0.04 -0.03 0.03 0.06 0.02 0.00 0.01 -0.01 ]
G [ 0.00 0.02 0.01 -0.01 0.01 0.03 -0.02 0.08 0.08 -0.04 -0.03 -0.01 0.06 -0.01 0.00 -0.01 -0.00 0.00 0.04 ]
T [ 0.01 -0.00 -0.02 0.01 0.03 -0.03 0.04 0.00 -0.02 0.07 -0.02 0.03 -0.02 0.03 -0.01 0.02 0.01 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 958

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 531

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 161

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 60

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF8) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001253.1 ZNF8 ENCSR785UCD MCF-7 Homo sapiens MA1718.1
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