Detailed information of deep learning profile BP001252.1

  1. Home
  2. Deep Learning Profile > BP001252.1
This page shows detailed deep learning-derived predictions and motifs for ZNF8 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF8
Model ID: BP001252.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA1718.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17098  
Source: ENCSR325QLX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 0.00 0.01 -0.00 0.03 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 0.02 0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.08 0.08 -0.00 0.03 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.01 -0.00 0.00 -0.00 0.01 0.04 0.00 -0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.01 0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.02 -0.00 0.07 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 1357 3573 4741 756 5801 2528 669 5947 737 567 619 522 5551 688 619 1289 703 3790 506 4137 221 6352 117 3680 25 7469 14 113 7103 121 6614 1290 274 514 697 1505 645 714 917 5429 1226 781 933 5126 1310 742 1050 3074 2234 912 ]
C [ 492 2248 547 481 429 580 571 386 1087 623 5533 5557 636 909 451 209 1275 633 235 95 379 157 1832 138 10 2 7627 7539 92 5980 297 235 525 699 491 3359 756 666 784 619 910 4776 4841 762 1226 1152 4195 1177 1441 3222 ]
G [ 4958 603 1734 542 567 3906 430 559 471 421 421 386 743 492 2449 5191 227 2772 236 2900 3831 1038 110 3581 35 215 23 14 420 430 467 1696 754 623 425 1793 441 557 582 626 477 576 448 692 1755 526 608 865 849 618 ]
T [ 887 1270 672 5915 897 680 6024 802 5399 6083 1121 1229 764 5605 4175 1005 5489 499 6717 562 3263 147 5635 295 7624 8 30 28 79 1163 316 4473 6141 5858 6081 1037 5852 5757 5411 1020 5081 1561 1472 1114 3403 5274 1841 2578 3170 2942 ]

Hypothetical CWM

   
A [ 0.01 0.02 0.01 0.02 -0.01 0.03 -0.02 0.03 -0.02 0.07 -0.02 0.00 0.04 -0.03 0.03 0.01 -0.02 -0.00 0.01 ]
C [ 0.04 0.00 -0.00 -0.01 0.00 -0.01 0.06 -0.01 -0.03 -0.04 0.08 0.08 -0.02 0.03 0.01 -0.01 0.01 0.02 0.00 ]
G [ -0.01 0.01 0.00 0.02 0.06 0.03 -0.03 0.04 -0.04 0.04 -0.02 -0.01 0.05 0.02 0.01 0.03 0.02 0.01 0.00 ]
T [ -0.00 0.00 0.03 0.01 0.00 -0.01 0.03 -0.01 0.07 -0.05 -0.01 -0.03 -0.03 0.01 -0.02 -0.00 0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 958

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 531

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 161

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 60

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF8) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001253.1 ZNF8 ENCSR785UCD MCF-7 Homo sapiens MA1718.1
Showing 1 profiles of page 1 from 1 pages
  • 1 (current)