Detailed information of deep learning profile BP001239.1

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This page shows detailed deep learning-derived predictions and motifs for IRF2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: IRF2
Model ID: BP001239.1
Cell line/tissue: K562
Class: Tryptophan cluster factors
Family: Interferon-regulatory factors
JASPAR ID: MA0051.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P14316  
Source: ENCSR376WCJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.02 0.02 -0.00 -0.00 -0.00 0.07 0.09 0.11 0.00 -0.00 0.00 0.08 0.09 0.10 -0.00 -0.00 0.01 0.01 0.01 0.01 ]
C [ 0.00 0.00 0.00 0.01 0.00 -0.00 0.00 -0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.02 0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 -0.00 0.04 0.00 -0.00 0.00 0.02 -0.00 0.10 0.00 -0.00 0.00 0.03 -0.00 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 915 893 832 804 909 864 931 859 850 940 847 875 792 839 902 1317 1476 1569 805 848 644 2620 2844 2890 610 340 143 2726 2920 2919 51 257 1403 1286 1174 1003 694 790 803 907 800 891 782 786 802 793 831 815 807 880 ]
C [ 655 612 677 661 646 643 685 661 686 634 634 607 701 686 607 437 391 351 637 629 298 31 1 3 802 833 0 8 0 0 1168 808 265 559 647 649 825 690 659 634 699 620 690 649 654 662 692 647 674 653 ]
G [ 699 695 699 739 677 724 653 720 678 681 710 738 774 734 810 697 520 459 897 567 1823 243 34 17 1418 63 2779 186 2 2 1688 151 972 755 669 619 751 681 845 683 773 703 777 791 779 713 761 748 777 706 ]
T [ 653 722 714 718 690 691 653 682 708 667 731 702 655 663 603 471 535 543 583 878 157 28 43 12 92 1686 0 2 0 1 15 1706 282 322 432 651 652 761 615 698 650 708 673 696 687 754 638 712 664 683 ]

Hypothetical CWM

   
A [ 0.02 0.03 0.00 -0.00 0.01 0.07 0.09 0.11 0.00 -0.02 0.02 0.08 0.09 0.10 -0.02 -0.02 0.02 0.02 0.01 0.01 ]
C [ -0.01 -0.00 0.02 0.04 -0.01 -0.04 -0.06 -0.05 0.04 0.06 -0.07 -0.05 -0.04 -0.04 0.06 0.03 -0.01 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.02 0.00 0.06 0.01 -0.03 -0.03 0.05 -0.03 0.10 0.01 -0.04 -0.02 0.06 -0.01 0.03 0.02 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.02 -0.03 0.00 -0.03 -0.03 0.04 -0.03 -0.04 -0.02 -0.04 -0.03 0.04 -0.00 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 443

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 155

CWM

PFM

     

HCWM

1 profiles found for the same TF (IRF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001240.1 IRF2 ENCSR645ZWR K562 Homo sapiens MA0051.2
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