Detailed information of deep learning profile BP001238.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF12 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF12
Model ID: BP001238.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: UN0161.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17014  
Source: ENCSR711KBM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 0.00 0.00 0.01 -0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.05 0.08 -0.00 0.04 0.03 0.02 0.00 0.01 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.05 0.00 -0.00 0.06 -0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 -0.00 0.00 0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.01 0.03 0.00 -0.00 0.00 0.01 0.01 0.00 -0.00 -0.00 -0.00 0.07 0.00 -0.00 0.07 -0.00 0.00 0.02 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.01 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.01 -0.00 -0.00 0.03 0.00 -0.00 0.02 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 ]

Frequency matrix

       
A [ 689 1772 646 1174 1839 626 552 593 1560 1041 523 575 775 1110 975 165 306 269 131 232 1045 1539 606 3286 3882 113 3450 3430 2945 1454 1929 1903 695 627 1178 707 1815 1674 1983 1220 820 734 923 867 1028 1129 968 736 761 749 ]
C [ 557 892 530 570 354 344 1019 1212 728 896 1091 617 889 930 262 56 3295 278 59 3436 265 91 289 21 54 3412 50 138 346 943 393 469 1780 2380 2009 1932 891 646 652 1322 761 885 799 875 741 552 674 1172 703 900 ]
G [ 1100 564 466 750 1267 2518 657 413 494 1488 1424 738 669 783 947 3659 200 159 3545 63 254 2155 131 669 50 326 412 294 597 467 581 1093 855 344 263 384 566 1086 727 564 676 1084 1257 1396 858 1514 1431 1049 972 790 ]
T [ 1655 773 2359 1507 541 513 1773 1783 1219 576 963 2071 1668 1178 1817 121 200 3295 266 270 2437 216 2975 25 15 150 89 139 113 1137 1098 536 671 650 551 978 729 595 639 895 1744 1298 1022 863 1374 806 928 1044 1565 1562 ]

Hypothetical CWM

   
A [ 0.01 -0.00 0.00 0.01 -0.01 -0.01 0.00 0.02 0.01 -0.01 0.00 -0.00 -0.00 0.01 -0.00 0.01 -0.01 -0.01 0.01 0.01 0.04 0.01 0.06 0.08 -0.03 0.04 0.04 0.02 0.01 0.02 0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.00 0.02 0.02 0.01 0.02 0.01 0.01 0.02 0.03 0.03 -0.01 0.05 0.03 -0.01 0.06 -0.00 -0.01 0.03 -0.04 -0.02 0.08 -0.03 0.01 0.02 0.02 0.01 0.00 0.01 ]
G [ 0.01 0.00 0.02 0.02 0.04 0.01 0.00 0.01 0.02 0.04 0.03 0.01 0.01 -0.01 0.08 0.01 0.01 0.07 -0.01 0.02 0.04 -0.02 0.06 0.00 0.02 0.04 -0.00 0.02 -0.00 0.01 0.03 0.03 ]
T [ -0.00 0.01 -0.00 -0.01 -0.01 0.01 0.01 -0.00 -0.01 0.00 0.01 0.02 0.02 0.02 -0.01 -0.01 0.03 0.00 0.00 0.03 -0.00 0.03 -0.04 -0.04 -0.00 -0.02 -0.01 -0.03 0.00 -0.02 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3053

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1640

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 832

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 517

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 381

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 379

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 316

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 225

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 106

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF12) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001237.1 ZNF12 ENCSR041YBR K562 Homo sapiens UN0161.2
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