Detailed information of deep learning profile BP001238.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF12 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF12
Model ID: BP001238.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: UN0161.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17014  
Source: ENCSR711KBM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.02 -0.00 0.00 0.03 -0.00 -0.00 0.01 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.01 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.02 0.00 -0.00 0.07 -0.00 0.00 0.07 -0.00 -0.00 -0.00 0.00 0.01 0.01 0.00 -0.00 0.00 0.03 0.01 0.00 0.00 0.00 ]
G [ -0.00 0.00 0.00 0.00 -0.00 -0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 0.06 -0.00 0.00 0.05 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.01 0.00 0.02 0.03 0.04 -0.00 0.08 0.05 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 0.01 0.00 0.00 0.01 ]

Frequency matrix

       
A [ 1562 1565 1044 928 806 1374 863 1022 1298 1744 895 639 595 729 978 551 650 671 536 1098 1137 113 139 89 150 15 25 2975 216 2437 270 266 3295 200 121 1817 1178 1668 2071 963 576 1219 1783 1773 513 541 1507 2359 773 1655 ]
C [ 790 972 1049 1431 1514 858 1396 1257 1084 676 564 727 1086 566 384 263 344 855 1093 581 467 597 294 412 326 50 669 131 2155 254 63 3545 159 200 3659 947 783 669 738 1424 1488 494 413 657 2518 1267 750 466 564 1100 ]
G [ 900 703 1172 674 552 741 875 799 885 761 1322 652 646 891 1932 2009 2380 1780 469 393 943 346 138 50 3412 54 21 289 91 265 3436 59 278 3295 56 262 930 889 617 1091 896 728 1212 1019 344 354 570 530 892 557 ]
T [ 749 761 736 968 1129 1028 867 923 734 820 1220 1983 1674 1815 707 1178 627 695 1903 1929 1454 2945 3430 3450 113 3882 3286 606 1539 1045 232 131 269 306 165 975 1110 775 575 523 1041 1560 593 552 626 1839 1174 646 1772 689 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.02 0.00 -0.03 -0.01 -0.02 -0.00 -0.04 -0.04 0.03 -0.00 0.03 0.00 0.00 0.03 -0.01 -0.01 0.02 0.02 0.02 0.01 0.00 -0.01 -0.00 0.01 0.01 -0.01 -0.01 -0.00 0.01 -0.00 ]
C [ 0.03 0.03 0.01 -0.00 0.02 -0.00 0.04 0.02 0.00 0.06 -0.02 0.04 0.02 -0.01 0.07 0.01 0.01 0.08 -0.01 0.01 0.01 0.03 0.04 0.02 0.01 0.00 0.01 0.04 0.02 0.02 0.00 0.01 ]
G [ 0.01 0.00 0.01 0.02 0.02 0.01 -0.03 0.08 -0.02 -0.04 0.03 -0.01 -0.00 0.06 -0.01 0.03 0.05 -0.01 0.03 0.03 0.02 0.01 0.01 0.02 0.01 0.02 0.02 0.00 0.01 0.01 0.01 0.01 ]
T [ -0.00 0.00 0.02 0.01 0.02 0.04 0.04 -0.03 0.08 0.06 0.01 0.04 0.01 0.01 -0.01 -0.01 0.01 -0.00 0.01 -0.00 -0.00 0.00 -0.01 0.01 0.02 0.00 -0.01 -0.01 0.01 0.00 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3053

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1640

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 832

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 517

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 381

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 379

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 316

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 225

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 106

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF12) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001237.1 ZNF12 ENCSR041YBR K562 Homo sapiens UN0161.2
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