Detailed information of deep learning profile BP001225.1

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This page shows detailed deep learning-derived predictions and motifs for TBX3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBX3
Model ID: BP001225.1
Cell line/tissue: HepG2
Class: T-Box factors
Family: TBX2-related factors
JASPAR ID: MA1566.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15119  
Source: ENCSR605YWG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 -0.00 0.01 0.00 0.01 0.00 0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 208 191 217 239 192 194 196 211 207 208 177 221 185 195 187 276 560 116 3 17 0 71 97 690 479 241 312 178 215 232 224 210 232 192 253 187 196 210 228 198 185 191 227 201 210 197 210 216 207 191 ]
C [ 179 182 185 159 158 154 184 157 157 163 179 146 176 201 143 121 25 72 2 27 0 48 308 6 105 205 75 135 181 170 179 202 160 186 158 175 149 160 172 171 157 168 170 172 160 175 174 188 166 185 ]
G [ 173 185 169 167 202 201 196 190 197 155 211 194 225 197 224 266 71 382 752 1 760 9 195 52 102 96 177 212 198 213 170 173 167 189 172 206 207 202 183 199 180 189 180 184 196 197 190 184 182 203 ]
T [ 200 202 189 195 208 211 184 202 199 234 193 199 174 167 206 97 104 190 3 715 0 632 160 12 74 218 196 235 166 145 187 175 201 193 177 192 208 188 177 192 238 212 183 203 194 191 186 172 205 181 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.00 -0.01 -0.00 -0.00 -0.01 0.01 0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 0.00 -0.01 0.00 -0.01 -0.00 0.00 -0.01 -0.00 0.00 -0.01 0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.01 0.01 -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 964

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 680

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 542

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 79

CWM

PFM

     

HCWM

1 profiles found for the same TF (TBX3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001224.1 TBX3 ENCSR238QRG HepG2 Homo sapiens MA1566.3
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