Detailed information of deep learning profile BP001224.1

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This page shows detailed deep learning-derived predictions and motifs for TBX3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBX3
Model ID: BP001224.1
Cell line/tissue: HepG2
Class: T-Box factors
Family: TBX2-related factors
JASPAR ID: MA1566.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15119  
Source: ENCSR238QRG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.01 0.02 0.00 0.02 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 220 253 213 235 241 234 244 259 225 218 223 216 221 260 233 227 213 194 263 280 691 85 0 5 1 80 22 793 556 363 290 243 239 233 224 240 262 245 245 238 214 243 253 233 230 229 236 222 227 238 ]
C [ 197 192 192 209 210 196 198 190 176 225 212 187 185 192 219 223 219 262 157 127 34 45 3 21 1 69 304 2 114 177 92 154 244 213 213 220 209 230 217 190 199 192 198 185 178 202 198 190 207 193 ]
G [ 238 204 245 226 204 217 216 202 259 222 235 249 237 204 217 234 272 237 301 358 77 671 873 0 878 6 352 51 155 158 222 215 213 235 256 202 208 204 218 197 239 221 219 225 223 220 225 226 214 212 ]
T [ 225 231 230 210 225 233 222 229 220 215 210 228 237 224 211 196 176 187 159 115 78 79 4 854 0 725 202 34 55 182 276 268 184 199 187 218 201 201 200 255 228 224 210 237 249 229 221 242 232 237 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.01 -0.00 -0.01 -0.01 -0.00 -0.00 -0.01 0.01 0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 -0.01 0.01 -0.01 0.00 0.01 -0.01 0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.01 0.02 -0.01 0.02 -0.01 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.01 0.01 0.00 -0.01 -0.01 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3942

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3388

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2557

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1706

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 836

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 768

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 27

CWM

PFM

     

HCWM

1 profiles found for the same TF (TBX3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001225.1 TBX3 ENCSR605YWG HepG2 Homo sapiens MA1566.3
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