Detailed information of deep learning profile BP001225.1

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This page shows detailed deep learning-derived predictions and motifs for TBX3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBX3
Model ID: BP001225.1
Cell line/tissue: HepG2
Class: T-Box factors
Family: TBX2-related factors
JASPAR ID: MA1566.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15119  
Source: ENCSR605YWG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.01 0.00 0.01 -0.00 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 181 205 172 186 191 194 203 183 212 238 192 177 188 208 192 177 193 201 175 187 145 166 235 196 218 74 12 160 632 0 715 3 190 104 97 206 167 174 199 193 234 199 202 184 211 208 195 189 202 200 ]
C [ 203 182 184 190 197 196 184 180 189 180 199 183 202 207 206 172 189 167 173 170 213 198 212 177 96 102 52 195 9 760 1 752 382 71 266 224 197 225 194 211 155 197 190 196 201 202 167 169 185 173 ]
G [ 185 166 188 174 175 160 172 170 168 157 171 172 160 149 175 158 186 160 202 179 170 181 135 75 205 105 6 308 48 0 27 2 72 25 121 143 201 176 146 179 163 157 157 184 154 158 159 185 182 179 ]
T [ 191 207 216 210 197 210 201 227 191 185 198 228 210 196 187 253 192 232 210 224 232 215 178 312 241 479 690 97 71 0 17 3 116 560 276 187 195 185 221 177 208 207 211 196 194 192 239 217 191 208 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.00 0.01 -0.01 0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 0.02 -0.01 0.01 -0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.01 0.00 -0.00 -0.01 0.00 -0.00 -0.01 0.00 -0.01 0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.01 -0.00 -0.00 -0.01 -0.00 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 964

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 680

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 542

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 79

CWM

PFM

     

HCWM

1 profiles found for the same TF (TBX3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001224.1 TBX3 ENCSR238QRG HepG2 Homo sapiens MA1566.3
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