Detailed information of deep learning profile BP001224.1

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This page shows detailed deep learning-derived predictions and motifs for TBX3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TBX3
Model ID: BP001224.1
Cell line/tissue: HepG2
Class: T-Box factors
Family: TBX2-related factors
JASPAR ID: MA1566.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15119  
Source: ENCSR238QRG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 0.00 0.02 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 237 232 242 221 229 249 237 210 224 228 255 200 201 201 218 187 199 184 268 276 182 55 34 202 725 0 854 4 79 78 115 159 187 176 196 211 224 237 228 210 215 220 229 222 233 225 210 230 231 225 ]
C [ 212 214 226 225 220 223 225 219 221 239 197 218 204 208 202 256 235 213 215 222 158 155 51 352 6 878 0 873 671 77 358 301 237 272 234 217 204 237 249 235 222 259 202 216 217 204 226 245 204 238 ]
G [ 193 207 190 198 202 178 185 198 192 199 190 217 230 209 220 213 213 244 154 92 177 114 2 304 69 1 21 3 45 34 127 157 262 219 223 219 192 185 187 212 225 176 190 198 196 210 209 192 192 197 ]
T [ 238 227 222 236 229 230 233 253 243 214 238 245 245 262 240 224 233 239 243 290 363 556 793 22 80 1 5 0 85 691 280 263 194 213 227 233 260 221 216 223 218 225 259 244 234 241 235 213 253 220 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.01 -0.01 0.00 0.01 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.01 0.02 -0.01 0.02 0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.00 -0.01 0.01 0.00 -0.01 0.01 -0.01 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.01 0.01 -0.01 -0.00 -0.00 -0.01 -0.01 -0.00 0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3942

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3388

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2557

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1706

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 836

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 768

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 27

CWM

PFM

     

HCWM

1 profiles found for the same TF (TBX3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001225.1 TBX3 ENCSR605YWG HepG2 Homo sapiens MA1566.3
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