Detailed information of deep learning profile BP001217.1

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This page shows detailed deep learning-derived predictions and motifs for PATZ1 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PATZ1
Model ID: BP001217.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA1961.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9HBE1  
Source: ENCSR966ULI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2601 2680 2624 2647 2565 2633 2491 2504 2481 2512 2350 2327 2316 2225 2320 2129 2095 2043 2071 1545 921 2792 27 41 45 168 136 1122 1394 1440 1865 2273 2493 2412 2294 2382 2465 2492 2545 2546 2588 2551 2602 2579 2471 2592 2504 2598 2516 2538 ]
C [ 3698 3771 3709 3565 3631 3585 3651 3616 3647 3621 3536 3384 3266 3124 3250 2998 3175 3096 2678 2548 2953 3175 16 29 46 288 217 4889 3057 2649 3167 2865 3290 3160 2870 3187 3314 3506 3719 3749 3631 3671 3773 3728 3854 3756 3809 3857 3861 3828 ]
G [ 4556 4474 4525 4585 4658 4686 4713 4858 4827 4826 5010 5242 5525 5672 5570 5870 5925 6241 6696 7632 8129 2293 13157 13135 13120 12730 12816 5959 7222 7715 6344 6293 5390 5632 6040 5706 5523 5206 4881 4761 4823 4835 4599 4662 4606 4545 4636 4493 4556 4483 ]
T [ 2374 2304 2371 2432 2375 2325 2374 2251 2274 2270 2333 2276 2122 2208 2089 2232 2034 1849 1784 1504 1226 4969 29 24 18 43 60 1259 1556 1425 1853 1798 2056 2025 2025 1954 1927 2025 2084 2173 2187 2172 2255 2260 2298 2336 2280 2281 2296 2380 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.02 -0.02 -0.02 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.01 0.01 0.00 0.00 ]
T [ -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.02 -0.02 -0.02 -0.02 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2832

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2682

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2403

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 623

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 596

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 374

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 219

CWM

PFM

     

HCWM

2 profiles found for the same TF (PATZ1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001216.1 PATZ1 ENCSR658YLN HepG2 Homo sapiens MA1961.2
BP001218.1 PATZ1 ENCSR969AIM SK-N-SH Homo sapiens MA1961.2
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