Detailed information of deep learning profile BP001216.1

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This page shows detailed deep learning-derived predictions and motifs for PATZ1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PATZ1
Model ID: BP001216.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA1961.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9HBE1  
Source: ENCSR658YLN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.03 0.04 0.04 0.04 0.03 0.00 0.01 0.01 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1502 1498 1501 1493 1522 1419 1453 1372 1327 1397 1363 1263 1298 1234 1225 1087 1296 1051 723 295 1458 38 90 83 117 117 755 1100 1188 1371 1554 1529 1369 1373 1482 1506 1512 1486 1441 1463 1480 1527 1512 1445 1435 1445 1467 1409 1419 1371 ]
C [ 2103 2067 2107 1973 2028 2085 2003 2098 2193 1989 2083 2220 2210 2162 2013 2289 2108 1456 1192 957 1280 8 13 44 97 876 4229 2232 1811 2097 1781 1874 1929 1996 2125 2217 2138 2286 2258 2309 2240 2305 2208 2264 2249 2256 2236 2274 2311 2284 ]
G [ 2399 2444 2368 2502 2460 2447 2526 2558 2466 2486 2452 2382 2386 2544 2590 2811 2822 3940 4744 5731 2455 7412 7346 7309 7239 6396 1672 3197 3535 2675 2922 2630 2714 2740 2577 2448 2463 2434 2351 2341 2396 2291 2342 2371 2381 2327 2344 2332 2325 2308 ]
T [ 1457 1452 1485 1493 1451 1510 1479 1433 1475 1589 1563 1596 1567 1521 1633 1274 1235 1014 802 478 2268 3 12 25 8 72 805 932 927 1318 1204 1428 1449 1352 1277 1290 1348 1255 1411 1348 1345 1338 1399 1381 1396 1433 1414 1446 1406 1498 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.02 0.03 0.03 0.03 0.04 0.04 0.04 0.03 0.02 0.01 0.01 0.01 0.01 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.02 -0.02 -0.03 -0.03 -0.03 -0.02 -0.02 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5201

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2674

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2508

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 2465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 2084

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 774

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 629

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 543

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 336

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 33

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 33

CWM

PFM

     

HCWM

2 profiles found for the same TF (PATZ1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001217.1 PATZ1 ENCSR966ULI HEK293 Homo sapiens MA1961.2
BP001218.1 PATZ1 ENCSR969AIM SK-N-SH Homo sapiens MA1961.2
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