Detailed information of deep learning profile BP001217.1

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This page shows detailed deep learning-derived predictions and motifs for PATZ1 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PATZ1
Model ID: BP001217.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA1961.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9HBE1  
Source: ENCSR966ULI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.02 0.02 0.02 0.02 0.02 0.00 0.01 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2380 2296 2281 2280 2336 2298 2260 2255 2172 2187 2173 2084 2025 1927 1954 2025 2025 2056 1798 1853 1425 1556 1259 60 43 18 24 29 4969 1226 1504 1784 1849 2034 2232 2089 2208 2122 2276 2333 2270 2274 2251 2374 2325 2375 2432 2371 2304 2374 ]
C [ 4483 4556 4493 4636 4545 4606 4662 4599 4835 4823 4761 4881 5206 5523 5706 6040 5632 5390 6293 6344 7715 7222 5959 12816 12730 13120 13135 13157 2293 8129 7632 6696 6241 5925 5870 5570 5672 5525 5242 5010 4826 4827 4858 4713 4686 4658 4585 4525 4474 4556 ]
G [ 3828 3861 3857 3809 3756 3854 3728 3773 3671 3631 3749 3719 3506 3314 3187 2870 3160 3290 2865 3167 2649 3057 4889 217 288 46 29 16 3175 2953 2548 2678 3096 3175 2998 3250 3124 3266 3384 3536 3621 3647 3616 3651 3585 3631 3565 3709 3771 3698 ]
T [ 2538 2516 2598 2504 2592 2471 2579 2602 2551 2588 2546 2545 2492 2465 2382 2294 2412 2493 2273 1865 1440 1394 1122 136 168 45 41 27 2792 921 1545 2071 2043 2095 2129 2320 2225 2316 2327 2350 2512 2481 2504 2491 2633 2565 2647 2624 2680 2601 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.02 -0.02 -0.02 -0.02 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 ]
C [ 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.02 -0.02 -0.02 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2832

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2682

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2403

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 623

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 596

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 374

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 219

CWM

PFM

     

HCWM

2 profiles found for the same TF (PATZ1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001216.1 PATZ1 ENCSR658YLN HepG2 Homo sapiens MA1961.2
BP001218.1 PATZ1 ENCSR969AIM SK-N-SH Homo sapiens MA1961.2
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