Detailed information of deep learning profile BP001216.1

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This page shows detailed deep learning-derived predictions and motifs for PATZ1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PATZ1
Model ID: BP001216.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA1961.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9HBE1  
Source: ENCSR658YLN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.01 0.01 0.00 0.03 0.04 0.04 0.04 0.03 0.01 0.02 0.01 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1498 1406 1446 1414 1433 1396 1381 1399 1338 1345 1348 1411 1255 1348 1290 1277 1352 1449 1428 1204 1318 927 932 805 72 8 25 12 3 2268 478 802 1014 1235 1274 1633 1521 1567 1596 1563 1589 1475 1433 1479 1510 1451 1493 1485 1452 1457 ]
C [ 2308 2325 2332 2344 2327 2381 2371 2342 2291 2396 2341 2351 2434 2463 2448 2577 2740 2714 2630 2922 2675 3535 3197 1672 6396 7239 7309 7346 7412 2455 5731 4744 3940 2822 2811 2590 2544 2386 2382 2452 2486 2466 2558 2526 2447 2460 2502 2368 2444 2399 ]
G [ 2284 2311 2274 2236 2256 2249 2264 2208 2305 2240 2309 2258 2286 2138 2217 2125 1996 1929 1874 1781 2097 1811 2232 4229 876 97 44 13 8 1280 957 1192 1456 2108 2289 2013 2162 2210 2220 2083 1989 2193 2098 2003 2085 2028 1973 2107 2067 2103 ]
T [ 1371 1419 1409 1467 1445 1435 1445 1512 1527 1480 1463 1441 1486 1512 1506 1482 1373 1369 1529 1554 1371 1188 1100 755 117 117 83 90 38 1458 295 723 1051 1296 1087 1225 1234 1298 1263 1363 1397 1327 1372 1453 1419 1522 1493 1501 1498 1502 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.02 -0.02 -0.03 -0.03 -0.03 -0.02 -0.02 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.03 0.04 0.04 0.04 0.03 0.03 0.03 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5201

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2674

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2508

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 2465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 2084

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 774

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 629

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 543

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 336

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 33

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 33

CWM

PFM

     

HCWM

2 profiles found for the same TF (PATZ1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001217.1 PATZ1 ENCSR966ULI HEK293 Homo sapiens MA1961.2
BP001218.1 PATZ1 ENCSR969AIM SK-N-SH Homo sapiens MA1961.2
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