Detailed information of deep learning profile BP001214.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF146 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF146
Model ID: BP001214.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: UN0316.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15072  
Source: ENCSR957LTN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.01 0.03 0.00 0.10 0.01 0.00 0.09 0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.09 -0.00 0.00 0.00 0.00 ]
G [ 0.07 -0.00 0.02 0.00 -0.00 0.04 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 ]
T [ 0.00 0.00 0.00 0.11 0.00 0.00 0.10 0.00 0.04 0.06 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4 30 31 0 51 13 1 52 1 0 0 0 49 2 7 17 3 28 3 41 3 48 1 42 3 49 6 16 31 18 33 7 10 4 3 11 6 9 2 26 5 14 4 26 7 13 6 15 15 10 ]
C [ 0 16 2 0 0 0 0 1 3 0 46 51 2 3 7 1 1 0 0 0 1 0 0 0 1 0 17 22 6 14 4 8 3 7 2 18 2 9 6 8 11 27 24 11 15 8 35 11 16 17 ]
G [ 47 1 20 0 2 39 0 0 1 1 0 0 0 1 14 31 0 22 0 7 0 1 0 9 0 1 2 2 1 4 2 3 1 5 2 4 1 2 2 2 0 2 2 5 9 5 0 5 5 8 ]
T [ 2 6 0 53 0 1 52 0 48 52 7 2 2 47 25 4 49 3 50 5 49 4 52 2 49 3 28 13 15 17 14 35 39 37 46 20 44 33 43 17 37 10 23 11 22 27 12 22 17 18 ]

Hypothetical CWM

   
A [ 0.03 -0.01 0.06 -0.06 0.11 0.04 -0.07 0.09 -0.04 -0.01 -0.02 -0.03 0.01 -0.02 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 ]
C [ -0.01 0.07 0.03 0.00 -0.01 0.05 -0.00 -0.00 0.05 -0.05 0.10 0.10 0.01 0.05 0.03 0.03 0.03 0.03 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 ]
G [ 0.08 -0.06 0.07 -0.03 -0.01 0.06 -0.01 0.03 0.01 0.02 -0.00 0.01 0.03 0.02 0.01 0.03 0.02 0.03 0.02 0.03 0.03 0.03 0.02 0.03 0.02 0.02 0.02 0.02 ]
T [ -0.01 0.05 -0.04 0.11 -0.02 -0.03 0.10 -0.03 0.04 0.06 -0.00 -0.00 -0.01 0.01 0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 16909

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 60

CWM

PFM

     

HCWM

2 profiles found for the same TF (ZNF146) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001212.1 ZNF146 ENCSR689YFA HEK293 Homo sapiens UN0316.1
BP001213.1 ZNF146 ENCSR713IFY K562 Homo sapiens UN0316.1
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