Detailed information of deep learning profile BP001197.1

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This page shows detailed deep learning-derived predictions and motifs for SP2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SP2
Model ID: BP001197.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0516.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02086  
Source: ENCSR946RZN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 0.01 0.01 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.02 0.02 0.00 0.03 0.02 0.01 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 515 541 508 503 493 556 528 482 470 483 506 451 480 474 506 402 544 947 677 532 692 97 93 28 25 28 443 1371 363 375 559 555 418 427 351 391 488 452 507 534 504 428 516 523 438 468 511 486 435 411 ]
C [ 747 701 776 718 715 762 799 755 750 774 755 766 829 796 801 713 721 504 283 153 135 99 98 2523 37 149 151 479 1629 762 411 927 856 556 663 761 715 730 753 697 766 814 706 738 801 771 777 719 747 753 ]
G [ 867 889 848 939 936 857 832 933 954 874 887 978 930 1020 982 1082 929 817 1414 1561 1605 2345 2380 14 2533 2305 1860 563 288 462 592 751 970 1187 1217 978 959 1014 916 944 874 906 911 878 929 904 881 912 914 962 ]
T [ 478 476 475 447 463 432 448 437 433 476 459 412 368 317 318 410 413 339 233 361 175 66 36 42 12 125 153 194 327 1008 1045 374 363 437 376 477 445 411 431 432 463 459 474 468 439 464 438 490 511 481 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.00 0.00 0.00 0.00 -0.01 -0.01 -0.01 -0.02 -0.02 -0.00 0.02 -0.00 -0.00 0.00 0.00 -0.01 -0.01 -0.01 -0.01 -0.01 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.01 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 0.00 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.02 -0.00 0.03 0.02 0.01 -0.01 -0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.01 -0.01 0.00 -0.01 -0.01 -0.01 -0.01 -0.03 -0.01 -0.00 -0.01 -0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5703

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1749

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 622

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 263

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 34

CWM

PFM

     

HCWM

1 profiles found for the same TF (SP2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001196.1 SP2 ENCSR807LQP HEK293 Homo sapiens MA0516.3
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