Detailed information of deep learning profile BP001196.1

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This page shows detailed deep learning-derived predictions and motifs for SP2 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SP2
Model ID: BP001196.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0516.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02086  
Source: ENCSR807LQP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 0.01 0.00 -0.00 ]
G [ 0.00 0.00 0.01 0.01 0.02 0.05 0.05 0.00 0.04 0.04 0.02 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1606 1577 1568 1590 1629 1636 1609 1540 1628 1603 1632 1623 1573 1479 1497 1304 1309 1265 1467 1478 1229 1770 2755 1928 1466 2073 1 1 930 44 1 1186 2250 1140 1013 2190 1817 1568 1584 1377 1489 1511 1515 1590 1576 1561 1495 1592 1518 1536 ]
C [ 2640 2644 2672 2560 2578 2635 2582 2626 2664 2355 2488 2593 2780 2961 2629 2769 3194 3437 3050 2602 2660 2575 1640 959 161 13 0 6 7378 12 0 114 1329 5593 3727 1544 2075 2217 2179 2421 2205 2264 2293 2377 2493 2466 2614 2458 2657 2671 ]
G [ 3061 3042 3043 3127 3085 3019 3082 3143 3101 3382 3307 3097 3117 3114 3331 3448 3148 3001 3105 3473 3593 3149 3129 5294 5493 6634 8723 8718 1 8640 8505 6867 4417 1116 1693 2515 3712 3908 3757 3800 3692 3675 3649 3493 3309 3327 3254 3339 3206 3152 ]
T [ 1418 1462 1442 1448 1433 1435 1452 1416 1332 1385 1298 1412 1255 1171 1268 1204 1074 1022 1103 1172 1243 1231 1201 544 1605 5 1 0 416 29 219 558 729 876 2292 2476 1121 1032 1205 1127 1339 1275 1268 1265 1347 1371 1362 1336 1344 1366 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 0.01 -0.03 -0.02 -0.01 -0.02 -0.03 0.00 0.01 -0.00 -0.01 ]
C [ 0.00 0.00 -0.00 -0.01 -0.03 -0.01 -0.01 0.03 0.00 -0.02 -0.01 0.01 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 0.05 0.05 -0.00 0.04 0.04 0.02 0.01 -0.00 0.00 ]
T [ -0.00 -0.01 -0.01 0.00 -0.03 -0.04 -0.03 -0.01 -0.02 0.00 -0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4491

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2370

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 240

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 97

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 27

CWM

PFM

     

HCWM

1 profiles found for the same TF (SP2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001197.1 SP2 ENCSR946RZN HepG2 Homo sapiens MA0516.3
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