Detailed information of deep learning profile BP001197.1

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This page shows detailed deep learning-derived predictions and motifs for SP2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SP2
Model ID: BP001197.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0516.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02086  
Source: ENCSR946RZN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.02 0.03 0.00 0.02 0.02 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.01 0.01 -0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 481 511 490 438 464 439 468 474 459 463 432 431 411 445 477 376 437 363 374 1045 1008 327 194 153 125 12 42 36 66 175 361 233 339 413 410 318 317 368 412 459 476 433 437 448 432 463 447 475 476 478 ]
C [ 962 914 912 881 904 929 878 911 906 874 944 916 1014 959 978 1217 1187 970 751 592 462 288 563 1860 2305 2533 14 2380 2345 1605 1561 1414 817 929 1082 982 1020 930 978 887 874 954 933 832 857 936 939 848 889 867 ]
G [ 753 747 719 777 771 801 738 706 814 766 697 753 730 715 761 663 556 856 927 411 762 1629 479 151 149 37 2523 98 99 135 153 283 504 721 713 801 796 829 766 755 774 750 755 799 762 715 718 776 701 747 ]
T [ 411 435 486 511 468 438 523 516 428 504 534 507 452 488 391 351 427 418 555 559 375 363 1371 443 28 25 28 93 97 692 532 677 947 544 402 506 474 480 451 506 483 470 482 528 556 493 503 508 541 515 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.01 -0.00 -0.01 -0.03 -0.01 -0.01 -0.01 -0.01 0.00 -0.01 -0.01 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.01 -0.00 -0.01 0.01 0.02 0.03 -0.00 0.02 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 0.01 0.03 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.01 -0.01 -0.01 -0.01 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.02 -0.02 -0.01 -0.01 -0.01 0.00 0.00 0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5703

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1749

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 622

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 263

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 34

CWM

PFM

     

HCWM

1 profiles found for the same TF (SP2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001196.1 SP2 ENCSR807LQP HEK293 Homo sapiens MA0516.3
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