Detailed information of deep learning profile BP001196.1

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This page shows detailed deep learning-derived predictions and motifs for SP2 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SP2
Model ID: BP001196.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0516.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02086  
Source: ENCSR807LQP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.02 0.04 0.04 0.00 0.05 0.05 0.02 0.01 0.01 0.00 0.00 ]
G [ -0.00 0.00 0.01 0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1366 1344 1336 1362 1371 1347 1265 1268 1275 1339 1127 1205 1032 1121 2476 2292 876 729 558 219 29 416 0 1 5 1605 544 1201 1231 1243 1172 1103 1022 1074 1204 1268 1171 1255 1412 1298 1385 1332 1416 1452 1435 1433 1448 1442 1462 1418 ]
C [ 3152 3206 3339 3254 3327 3309 3493 3649 3675 3692 3800 3757 3908 3712 2515 1693 1116 4417 6867 8505 8640 1 8718 8723 6634 5493 5294 3129 3149 3593 3473 3105 3001 3148 3448 3331 3114 3117 3097 3307 3382 3101 3143 3082 3019 3085 3127 3043 3042 3061 ]
G [ 2671 2657 2458 2614 2466 2493 2377 2293 2264 2205 2421 2179 2217 2075 1544 3727 5593 1329 114 0 12 7378 6 0 13 161 959 1640 2575 2660 2602 3050 3437 3194 2769 2629 2961 2780 2593 2488 2355 2664 2626 2582 2635 2578 2560 2672 2644 2640 ]
T [ 1536 1518 1592 1495 1561 1576 1590 1515 1511 1489 1377 1584 1568 1817 2190 1013 1140 2250 1186 1 44 930 1 1 2073 1466 1928 2755 1770 1229 1478 1467 1265 1309 1304 1497 1479 1573 1623 1632 1603 1628 1540 1609 1636 1629 1590 1568 1577 1606 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.00 0.00 -0.02 -0.01 -0.03 -0.04 -0.03 0.00 -0.01 -0.01 -0.00 ]
C [ 0.00 -0.00 0.01 0.02 0.04 0.04 -0.00 0.05 0.05 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.01 -0.01 -0.02 0.00 0.03 -0.01 -0.01 -0.03 -0.01 -0.00 0.00 0.00 ]
T [ -0.01 -0.00 0.01 0.00 -0.03 -0.02 -0.01 -0.02 -0.03 0.01 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4491

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2370

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 240

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 97

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 27

CWM

PFM

     

HCWM

1 profiles found for the same TF (SP2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001197.1 SP2 ENCSR946RZN HepG2 Homo sapiens MA0516.3
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