Detailed information of deep learning profile BP001188.1

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This page shows detailed deep learning-derived predictions and motifs for TCF7 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF7
Model ID: BP001188.1
Cell line/tissue: GM12878
Class: High-mobility group (HMG) domain factors
Family: TCF-7-related factors
JASPAR ID: MA0769.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P36402  
Source: ENCSR501DKS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 0.02 -0.00 0.03 -0.00 -0.00 0.06 0.05 0.05 0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.04 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 -0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 731 691 696 660 690 641 657 651 658 642 669 625 655 694 635 792 1022 1797 8 1527 16 47 2252 2240 2236 266 739 871 876 738 618 688 654 702 763 669 660 712 655 663 706 640 630 677 675 671 625 670 625 671 ]
C [ 468 455 431 479 444 518 470 547 487 458 409 473 475 512 569 486 417 57 1108 4 0 1978 0 2 0 72 365 498 442 432 508 441 499 433 411 488 445 469 477 489 483 469 477 441 452 472 491 481 508 509 ]
G [ 472 521 533 548 493 504 481 472 484 557 533 541 520 483 487 509 569 166 1126 0 0 223 0 10 15 1910 939 680 479 422 523 578 538 557 552 507 520 479 513 527 495 496 524 526 546 501 537 523 500 476 ]
T [ 582 586 593 566 626 590 645 583 624 596 642 614 603 564 562 466 245 233 11 722 2237 5 1 1 2 5 210 204 456 661 604 546 562 561 527 589 628 593 608 574 569 648 622 609 580 609 600 579 620 597 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.01 0.03 -0.02 0.04 0.00 -0.00 0.06 0.05 0.05 0.01 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.01 0.01 0.01 -0.01 0.04 -0.03 -0.02 0.04 -0.05 -0.02 -0.03 0.01 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.00 0.03 -0.04 -0.05 0.01 -0.02 -0.00 -0.01 0.03 0.01 0.01 0.01 0.00 ]
T [ 0.00 0.00 0.00 -0.01 -0.00 -0.01 0.02 0.05 -0.02 0.00 -0.02 -0.01 -0.03 -0.01 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2169

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1318

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 404

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 388

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 88

CWM

PFM

     

HCWM

2 profiles found for the same TF (TCF7) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001187.1 TCF7 ENCSR444LIN HepG2 Homo sapiens MA0769.3
BP001189.1 TCF7 ENCSR863KUB K562 Homo sapiens MA0769.3
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