Detailed information of deep learning profile BP001188.1

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This page shows detailed deep learning-derived predictions and motifs for TCF7 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF7
Model ID: BP001188.1
Cell line/tissue: GM12878
Class: High-mobility group (HMG) domain factors
Family: TCF-7-related factors
JASPAR ID: MA0769.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P36402  
Source: ENCSR501DKS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]
C [ -0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.04 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.00 0.05 0.05 0.06 -0.00 -0.00 0.03 -0.00 0.02 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 597 620 579 600 609 580 609 622 648 569 574 608 593 628 589 527 561 562 546 604 661 456 204 210 5 2 1 1 5 2237 722 11 233 245 466 562 564 603 614 642 596 624 583 645 590 626 566 593 586 582 ]
C [ 476 500 523 537 501 546 526 524 496 495 527 513 479 520 507 552 557 538 578 523 422 479 680 939 1910 15 10 0 223 0 0 1126 166 569 509 487 483 520 541 533 557 484 472 481 504 493 548 533 521 472 ]
G [ 509 508 481 491 472 452 441 477 469 483 489 477 469 445 488 411 433 499 441 508 432 442 498 365 72 0 2 0 1978 0 4 1108 57 417 486 569 512 475 473 409 458 487 547 470 518 444 479 431 455 468 ]
T [ 671 625 670 625 671 675 677 630 640 706 663 655 712 660 669 763 702 654 688 618 738 876 871 739 266 2236 2240 2252 47 16 1527 8 1797 1022 792 635 694 655 625 669 642 658 651 657 641 690 660 696 691 731 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 -0.01 -0.03 -0.01 -0.02 0.00 -0.02 0.05 0.02 -0.01 -0.00 -0.01 0.00 0.00 0.00 ]
C [ 0.00 0.01 0.01 0.01 0.03 -0.01 -0.00 -0.02 0.01 -0.05 -0.04 0.03 -0.00 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.01 -0.03 -0.02 -0.05 0.04 -0.02 -0.03 0.04 -0.01 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.01 0.01 0.01 0.01 0.05 0.05 0.06 -0.00 0.00 0.04 -0.02 0.03 0.01 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2169

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1318

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 404

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 388

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 88

CWM

PFM

     

HCWM

2 profiles found for the same TF (TCF7) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001187.1 TCF7 ENCSR444LIN HepG2 Homo sapiens MA0769.3
BP001189.1 TCF7 ENCSR863KUB K562 Homo sapiens MA0769.3
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