Detailed information of deep learning profile BP001187.1

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This page shows detailed deep learning-derived predictions and motifs for TCF7 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF7
Model ID: BP001187.1
Cell line/tissue: HepG2
Class: High-mobility group (HMG) domain factors
Family: TCF-7-related factors
JASPAR ID: MA0769.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P36402  
Source: ENCSR444LIN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 0.00 0.01 0.04 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.04 0.00 -0.00 0.01 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.00 0.06 0.07 0.08 -0.00 0.00 0.02 -0.00 0.02 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2028 2049 2089 2034 1932 2002 2090 2017 1995 1985 2018 2062 2056 2033 1892 1903 1782 1130 849 56 147 13 3 106 7363 2828 267 844 946 1478 1649 1775 1895 1918 1923 1880 2003 2166 2143 2086 2138 2018 1995 1924 1902 1969 2015 2032 1994 2009 ]
C [ 1914 1932 1868 1874 1946 1894 1975 2001 1898 2022 2119 1977 1993 2159 1904 1656 1472 2390 3598 6646 195 144 0 867 14 260 4257 1118 2162 1786 1830 1905 1934 1910 1985 2044 1838 1780 1756 1846 1866 1851 1879 2078 1939 1860 1825 1855 1974 1859 ]
G [ 1775 1838 1747 1760 1933 1914 1701 1734 1793 1767 1734 1787 1868 1757 2102 1890 2003 2110 1473 365 20 47 1 6697 76 76 3288 301 1505 1594 2478 1981 1995 1863 1718 1668 1611 1690 1932 1942 1641 1864 1813 1749 1728 1807 1793 1751 1698 1737 ]
T [ 2227 2125 2240 2276 2133 2134 2178 2192 2258 2170 2073 2118 2027 1995 2046 2495 2687 2314 2024 877 7582 7740 7940 274 491 4780 132 5681 3331 3086 1987 2283 2120 2253 2318 2352 2492 2308 2113 2070 2299 2211 2257 2193 2375 2308 2311 2306 2278 2339 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.01 -0.01 -0.04 -0.00 -0.05 -0.01 -0.01 0.06 0.03 -0.01 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 -0.00 0.01 0.02 0.05 -0.02 -0.01 -0.05 -0.00 -0.05 -0.03 0.04 0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 -0.05 -0.02 -0.05 0.05 -0.02 -0.03 0.03 -0.01 0.01 0.01 0.01 ]
T [ 0.01 0.00 0.00 0.01 0.01 0.06 0.07 0.08 -0.01 0.01 0.04 -0.03 0.03 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2868

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2660

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1848

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 783

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 564

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 406

CWM

PFM

     

HCWM

2 profiles found for the same TF (TCF7) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001188.1 TCF7 ENCSR501DKS GM12878 Homo sapiens MA0769.3
BP001189.1 TCF7 ENCSR863KUB K562 Homo sapiens MA0769.3
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