Detailed information of deep learning profile BP001185.1

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This page shows detailed deep learning-derived predictions and motifs for THRA in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: THRA
Model ID: BP001185.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
JASPAR ID: MA1969.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P10827  
Source: ENCSR551QJT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 0.04 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.06 0.07 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.04 0.05 0.01 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 -0.00 0.00 0.00 0.00 0.01 0.00 0.00 -0.00 0.03 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.03 -0.00 0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 0.00 0.04 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1057 736 734 652 688 740 806 648 689 654 644 803 938 946 687 630 572 615 214 249 1816 96 16 26 243 2039 935 1044 87 436 2651 379 99 58 427 696 568 609 742 689 615 641 698 730 688 733 675 731 727 767 ]
C [ 795 844 822 1116 943 873 776 890 1179 879 1030 942 878 880 1163 1066 1239 1114 223 251 263 3246 3338 756 1702 226 594 628 249 241 374 2630 3064 1400 1203 882 1102 1132 878 1226 1185 960 962 859 894 1104 1153 827 1125 1054 ]
G [ 812 1012 1016 807 719 1014 1057 777 731 753 777 951 711 831 733 710 707 987 98 2695 448 7 1 41 625 953 1237 1102 106 2617 290 21 21 70 626 765 1035 806 947 745 759 722 735 1048 991 800 749 747 731 793 ]
T [ 697 769 789 786 1011 734 722 1046 762 1075 910 665 834 704 778 955 843 645 2826 166 834 12 6 2538 791 143 595 587 2919 67 46 331 177 1833 1105 1018 656 814 794 701 802 1038 966 724 788 724 784 1056 778 747 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.00 -0.02 0.01 0.03 0.01 -0.01 -0.04 -0.01 0.03 0.01 0.01 -0.02 0.01 0.05 0.02 -0.02 -0.04 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.00 0.01 -0.01 -0.01 0.06 0.07 0.02 0.02 -0.01 0.01 -0.00 0.02 -0.00 0.00 0.05 0.05 0.02 0.01 -0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.04 -0.00 -0.03 -0.01 -0.01 0.01 0.03 0.02 0.02 -0.03 0.04 0.00 -0.03 -0.01 -0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.01 0.04 -0.02 0.01 -0.02 -0.03 0.04 0.02 -0.02 -0.00 0.00 0.04 -0.03 -0.04 -0.02 -0.01 0.03 0.01 0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2376

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2071

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1969

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1450

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1144

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 805

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 797

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 565

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 380

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 51

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 27

CWM

PFM

     

HCWM

1 profiles found for the same TF (THRA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001184.1 THRA ENCSR264CZJ K562 Homo sapiens MA1969.2
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