Detailed information of deep learning profile BP001185.1

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This page shows detailed deep learning-derived predictions and motifs for THRA in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: THRA
Model ID: BP001185.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
JASPAR ID: MA1969.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P10827  
Source: ENCSR551QJT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.03 -0.00 0.00 0.00 0.01 0.00 0.00 0.00 -0.00 -0.00 0.03 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.01 0.05 0.04 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 0.07 0.06 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.04 0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 747 778 1056 784 724 788 724 966 1038 802 701 794 814 656 1018 1105 1833 177 331 46 67 2919 587 595 143 791 2538 6 12 834 166 2826 645 843 955 778 704 834 665 910 1075 762 1046 722 734 1011 786 789 769 697 ]
C [ 793 731 747 749 800 991 1048 735 722 759 745 947 806 1035 765 626 70 21 21 290 2617 106 1102 1237 953 625 41 1 7 448 2695 98 987 707 710 733 831 711 951 777 753 731 777 1057 1014 719 807 1016 1012 812 ]
G [ 1054 1125 827 1153 1104 894 859 962 960 1185 1226 878 1132 1102 882 1203 1400 3064 2630 374 241 249 628 594 226 1702 756 3338 3246 263 251 223 1114 1239 1066 1163 880 878 942 1030 879 1179 890 776 873 943 1116 822 844 795 ]
T [ 767 727 731 675 733 688 730 698 641 615 689 742 609 568 696 427 58 99 379 2651 436 87 1044 935 2039 243 26 16 96 1816 249 214 615 572 630 687 946 938 803 644 654 689 648 806 740 688 652 734 736 1057 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 0.01 0.03 -0.01 -0.02 -0.04 -0.03 0.04 0.00 -0.00 -0.02 0.02 0.04 -0.03 -0.02 0.01 -0.02 0.04 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 -0.01 -0.01 -0.03 0.00 0.04 -0.03 0.02 0.02 0.03 0.01 -0.01 -0.01 -0.03 -0.00 0.04 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 -0.00 0.01 0.02 0.05 0.05 0.00 -0.00 0.02 -0.00 0.01 -0.01 0.02 0.02 0.07 0.06 -0.01 -0.01 0.01 0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.04 -0.02 0.02 0.05 0.01 -0.02 0.01 0.01 0.03 -0.01 -0.04 -0.01 0.01 0.03 0.01 -0.02 -0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2376

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2071

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1969

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1450

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1144

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 805

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 797

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 565

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 380

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 51

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 27

CWM

PFM

     

HCWM

1 profiles found for the same TF (THRA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001184.1 THRA ENCSR264CZJ K562 Homo sapiens MA1969.2
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