Detailed information of deep learning profile BP001183.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF18 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF18
Model ID: BP001183.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: UN0317.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17022  
Source: ENCSR977HTH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.05 0.00 0.07 0.00 -0.00 0.01 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.08 -0.00 0.08 0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 0.04 0.07 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1668 1504 2462 3181 3280 1407 1156 1253 1165 2539 1604 1332 1252 2531 1224 1273 1118 1697 3074 1433 1301 85 4 7353 0 8135 0 339 4430 1255 1153 1529 1586 2234 1200 1184 1141 1598 2368 1240 1551 3102 1195 1322 1297 1261 1312 1700 2640 1744 ]
C [ 1585 1439 3190 1518 1831 1658 3241 1676 4476 2804 1467 3202 3551 1360 3459 4419 3962 2451 543 806 590 1 8117 539 8145 3 8161 5992 1171 2525 1514 3288 2393 3284 4657 1783 2828 4277 3201 1772 4293 2767 1433 3146 3202 1435 3788 3113 2663 2298 ]
G [ 1806 3939 1237 2263 1820 3063 1468 2215 1144 1316 3960 1403 2161 1330 2143 1461 1290 3112 3008 5858 194 68 0 14 1 10 7 36 895 1462 954 2169 1012 1161 1046 1118 2912 1146 1473 2154 1046 1085 2907 2171 2110 2412 1458 2073 1200 2843 ]
T [ 3110 1287 1280 1207 1238 2041 2304 3025 1384 1510 1138 2232 1205 2948 1343 1016 1799 909 1544 72 6084 8015 48 263 23 21 1 1802 1673 2927 4548 1183 3178 1490 1266 4084 1288 1148 1127 3003 1279 1215 2634 1530 1560 3061 1611 1283 1666 1284 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.01 0.02 -0.00 0.00 -0.04 0.05 -0.04 0.07 -0.04 -0.01 0.01 0.00 0.01 0.00 ]
C [ 0.00 0.01 0.02 -0.01 -0.00 -0.00 -0.07 0.07 -0.01 0.08 -0.04 0.08 0.03 0.00 0.01 0.01 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.04 -0.02 -0.00 -0.04 -0.02 -0.04 -0.01 -0.01 -0.02 0.01 0.01 0.01 0.00 ]
T [ -0.00 0.00 -0.00 0.01 -0.03 0.05 0.07 0.01 -0.01 0.00 -0.01 -0.02 0.02 0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 775

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 286

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF18) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001182.1 ZNF18 ENCSR553ZJQ HepG2 Homo sapiens UN0317.2
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