Detailed information of deep learning profile BP001182.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF18 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF18
Model ID: BP001182.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: UN0317.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17022  
Source: ENCSR553ZJQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.02 0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.03 -0.00 0.03 0.00 0.03 0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 0.01 0.03 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 736 837 602 551 581 532 1009 578 659 468 901 604 594 588 468 877 860 532 77 26 2713 50 3039 3 241 1069 511 509 783 839 752 584 527 588 804 899 625 788 711 529 560 638 555 639 684 1070 669 864 617 743 ]
C [ 861 810 761 875 917 1363 808 837 795 1054 718 1095 1136 983 814 230 364 885 3 3006 260 3050 11 3081 2081 524 1021 822 924 1046 995 1282 953 1257 1170 871 989 1111 1214 682 869 864 755 974 802 796 897 761 965 975 ]
G [ 893 892 1019 858 854 622 704 1215 817 941 836 893 925 856 1063 1146 1847 231 54 19 25 4 28 17 46 694 953 599 919 531 585 561 681 677 554 859 818 638 612 739 870 837 1110 822 1036 703 1021 917 940 654 ]
T [ 625 576 733 831 763 598 594 485 844 652 660 523 460 688 770 862 44 1467 2981 64 117 11 37 14 747 828 630 1185 489 699 783 688 954 593 587 486 683 578 578 1165 816 776 695 680 593 546 528 573 593 743 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.01 0.00 0.01 -0.00 -0.00 -0.01 0.02 -0.00 0.03 -0.02 -0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.01 -0.01 0.00 -0.03 0.03 -0.01 0.03 -0.02 0.03 0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.01 0.00 0.02 -0.01 0.01 -0.02 -0.00 -0.02 -0.00 -0.01 -0.01 0.01 0.01 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 0.00 -0.03 0.02 0.03 0.00 -0.01 -0.01 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1434

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 854

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 772

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 269

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 256

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 169

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF18) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001183.1 ZNF18 ENCSR977HTH HEK293 Homo sapiens UN0317.2
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