Detailed information of deep learning profile BP001183.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF18 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF18
Model ID: BP001183.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: UN0317.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17022  
Source: ENCSR977HTH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.04 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.03 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.02 0.08 -0.00 0.08 -0.00 0.07 0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.01 -0.00 0.00 0.07 0.00 0.05 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1284 1666 1283 1611 3061 1560 1530 2634 1215 1279 3003 1127 1148 1288 4084 1266 1490 3178 1183 4548 2927 1673 1802 1 21 23 263 48 8015 6084 72 1544 909 1799 1016 1343 2948 1205 2232 1138 1510 1384 3025 2304 2041 1238 1207 1280 1287 3110 ]
C [ 2843 1200 2073 1458 2412 2110 2171 2907 1085 1046 2154 1473 1146 2912 1118 1046 1161 1012 2169 954 1462 895 36 7 10 1 14 0 68 194 5858 3008 3112 1290 1461 2143 1330 2161 1403 3960 1316 1144 2215 1468 3063 1820 2263 1237 3939 1806 ]
G [ 2298 2663 3113 3788 1435 3202 3146 1433 2767 4293 1772 3201 4277 2828 1783 4657 3284 2393 3288 1514 2525 1171 5992 8161 3 8145 539 8117 1 590 806 543 2451 3962 4419 3459 1360 3551 3202 1467 2804 4476 1676 3241 1658 1831 1518 3190 1439 1585 ]
T [ 1744 2640 1700 1312 1261 1297 1322 1195 3102 1551 1240 2368 1598 1141 1184 1200 2234 1586 1529 1153 1255 4430 339 0 8135 0 7353 4 85 1301 1433 3074 1697 1118 1273 1224 2531 1252 1332 1604 2539 1165 1253 1156 1407 3280 3181 2462 1504 1668 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.00 0.02 -0.02 -0.01 0.00 -0.01 0.01 0.07 0.05 -0.03 0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.01 -0.02 -0.01 -0.01 -0.04 -0.02 -0.04 -0.00 -0.02 0.04 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.01 0.01 0.00 0.03 0.08 -0.04 0.08 -0.01 0.07 -0.07 -0.00 -0.00 -0.01 0.02 0.01 0.00 ]
T [ 0.00 0.01 0.00 0.01 -0.01 -0.04 0.07 -0.04 0.05 -0.04 0.00 -0.00 0.02 0.01 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 775

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 286

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF18) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001182.1 ZNF18 ENCSR553ZJQ HepG2 Homo sapiens UN0317.2
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