Detailed information of deep learning profile BP001182.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF18 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF18
Model ID: BP001182.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: UN0317.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17022  
Source: ENCSR553ZJQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.01 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.01 0.03 0.00 0.03 -0.00 0.03 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 0.00 0.02 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 743 593 573 528 546 593 680 695 776 816 1165 578 578 683 486 587 593 954 688 783 699 489 1185 630 828 747 14 37 11 117 64 2981 1467 44 862 770 688 460 523 660 652 844 485 594 598 763 831 733 576 625 ]
C [ 654 940 917 1021 703 1036 822 1110 837 870 739 612 638 818 859 554 677 681 561 585 531 919 599 953 694 46 17 28 4 25 19 54 231 1847 1146 1063 856 925 893 836 941 817 1215 704 622 854 858 1019 892 893 ]
G [ 975 965 761 897 796 802 974 755 864 869 682 1214 1111 989 871 1170 1257 953 1282 995 1046 924 822 1021 524 2081 3081 11 3050 260 3006 3 885 364 230 814 983 1136 1095 718 1054 795 837 808 1363 917 875 761 810 861 ]
T [ 743 617 864 669 1070 684 639 555 638 560 529 711 788 625 899 804 588 527 584 752 839 783 509 511 1069 241 3 3039 50 2713 26 77 532 860 877 468 588 594 604 901 468 659 578 1009 532 581 551 602 837 736 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.01 -0.01 0.00 0.03 0.02 -0.03 0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 0.01 -0.01 -0.01 -0.00 -0.02 -0.00 -0.02 0.01 -0.01 0.02 0.00 0.01 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.01 0.03 -0.02 0.03 -0.01 0.03 -0.03 0.00 -0.01 -0.01 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.01 -0.02 0.03 -0.00 0.02 -0.01 -0.00 -0.00 0.01 0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1434

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 854

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 772

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 269

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 256

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 169

CWM

PFM

     

HCWM

1 profiles found for the same TF (ZNF18) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001183.1 ZNF18 ENCSR977HTH HEK293 Homo sapiens UN0317.2
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