Detailed information of deep learning profile BP001162.1

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This page shows detailed deep learning-derived predictions and motifs for KLF1 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: KLF1
Model ID: BP001162.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0493.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13351  
Source: ENCSR859BMR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.04 0.05 0.06 0.00 0.04 0.01 0.02 0.02 -0.00 0.00 0.01 0.02 0.03 0.02 0.02 0.02 0.02 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 229 217 213 239 238 220 233 231 211 223 228 244 274 247 242 339 79 0 0 121 1 18 161 65 153 264 219 125 27 108 118 113 89 145 167 162 174 194 195 204 231 210 221 175 208 216 215 216 202 257 ]
C [ 282 287 261 262 276 283 251 268 273 246 245 232 225 239 294 106 0 0 0 542 0 25 43 52 568 370 141 45 7 134 188 132 84 69 182 284 335 304 252 273 285 259 222 296 315 296 250 256 298 275 ]
G [ 401 394 407 397 400 416 433 408 423 433 444 459 434 439 375 362 1028 1107 1107 0 1100 810 857 898 215 230 623 860 1061 771 665 660 804 765 594 488 419 390 457 404 417 441 467 437 396 397 409 425 407 394 ]
T [ 195 209 226 209 193 188 190 200 200 205 190 172 174 182 196 300 0 0 0 444 6 254 46 92 171 243 124 77 12 94 136 202 130 128 164 173 179 219 203 226 174 197 197 199 188 198 233 210 200 181 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 0.00 -0.04 -0.03 -0.01 -0.02 -0.02 -0.00 -0.01 -0.01 -0.00 -0.00 -0.01 -0.01 -0.02 -0.01 -0.01 -0.01 -0.01 ]
C [ 0.00 0.00 0.00 0.00 -0.03 -0.01 -0.02 0.03 -0.02 -0.00 -0.00 -0.01 0.02 0.01 0.00 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]
G [ 0.00 0.01 0.01 0.01 0.04 0.05 0.06 -0.03 0.04 0.02 0.02 0.02 -0.00 0.01 0.01 0.02 0.03 0.02 0.02 0.01 0.02 0.02 ]
T [ -0.00 -0.00 -0.00 0.00 -0.03 -0.03 -0.03 0.01 -0.01 0.01 -0.01 0.00 0.00 -0.00 -0.01 -0.01 -0.02 -0.01 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 772

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 139

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 106

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 89

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 86

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 53

CWM

PFM

     

HCWM

1 profiles found for the same TF (KLF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001161.1 KLF1 ENCSR550HCT K562 Homo sapiens MA0493.3
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