Detailed information of deep learning profile BP001155.1

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This page shows detailed deep learning-derived predictions and motifs for HNF1A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF1A
Model ID: BP001155.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: POU domain factors
JASPAR ID: MA0046.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P20823  
Source: ENCSR800QIT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.10 0.07 0.00 -0.00 0.06 -0.00 -0.00 0.06 0.08 -0.00 -0.00 0.01 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.01 -0.00 -0.00 0.00 ]
G [ 0.00 -0.00 -0.00 0.01 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.01 -0.00 -0.00 0.05 0.04 -0.00 -0.00 0.05 -0.00 0.00 0.08 0.12 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1704 1664 1817 1713 1745 1689 1719 1742 1715 1817 1715 1741 1783 1755 1759 1685 1395 1603 1869 1423 494 1072 5617 4943 1695 1003 4764 168 30 5522 5978 189 1200 2414 1963 1850 1716 1655 1668 1573 1824 1975 1926 1712 1817 1836 1678 1847 1758 1763 ]
C [ 1388 1574 1453 1440 1439 1459 1365 1384 1382 1280 1356 1334 1418 1432 1466 1517 1702 1277 562 307 751 795 22 724 236 1962 39 15 72 62 85 5878 2247 1185 1253 1342 1367 1457 1414 1498 1403 1334 1376 1411 1418 1331 1420 1329 1321 1355 ]
G [ 1441 1310 1285 1361 1303 1349 1447 1497 1376 1274 1471 1458 1384 1394 1343 1243 1218 1146 2349 3558 771 457 486 107 80 1883 253 315 10 238 200 57 164 984 1718 1547 1386 1487 1354 1315 1326 1273 1399 1483 1349 1430 1429 1417 1424 1521 ]
T [ 1776 1761 1754 1795 1822 1812 1778 1686 1836 1938 1767 1776 1724 1728 1741 1864 1994 2283 1529 1021 4293 3985 184 535 4298 1461 1253 5811 6197 487 46 185 2698 1726 1375 1570 1840 1710 1873 1923 1756 1727 1608 1703 1725 1712 1782 1716 1806 1670 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 0.02 0.02 -0.03 0.00 0.11 0.08 0.03 0.01 0.08 0.01 -0.03 0.07 0.08 -0.00 -0.01 0.02 0.02 0.01 0.00 ]
C [ 0.01 0.02 0.02 0.00 -0.03 0.01 0.01 -0.08 -0.00 -0.00 0.03 -0.07 -0.07 0.01 -0.04 -0.01 0.08 0.04 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.04 0.07 -0.01 -0.03 0.02 -0.07 -0.07 0.03 0.00 -0.00 -0.08 0.01 0.01 -0.04 -0.00 0.01 0.02 0.01 0.01 ]
T [ 0.01 0.02 0.02 -0.00 -0.00 0.08 0.07 -0.02 0.01 0.08 0.01 0.02 0.09 0.12 0.01 -0.03 0.02 0.03 0.00 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2598

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1682

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1232

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 792

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 54

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 50

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 25

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 20

CWM

PFM

     

HCWM

1 profiles found for the same TF (HNF1A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001154.1 HNF1A ENCSR633HRJ HepG2 Homo sapiens MA0046.3
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