Detailed information of deep learning profile BP001154.1

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This page shows detailed deep learning-derived predictions and motifs for HNF1A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF1A
Model ID: BP001154.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: POU domain factors
JASPAR ID: MA0046.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P20823  
Source: ENCSR633HRJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.08 0.05 0.00 -0.00 0.06 -0.00 -0.00 0.05 0.06 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.04 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 0.05 0.04 -0.00 -0.00 0.03 -0.00 0.00 0.07 0.09 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1271 1249 1408 1185 1222 1195 1235 1257 1232 1300 1280 1343 1278 1292 1286 1267 1095 1286 1523 864 314 633 4225 3532 1841 608 4206 86 30 3902 4216 212 903 1817 1413 1273 1239 1198 1227 1206 1356 1510 1376 1221 1305 1420 1208 1382 1309 1247 ]
C [ 1065 1178 1070 1164 1084 1049 1018 1063 1061 975 990 968 1067 1067 1078 1117 1260 872 395 199 447 542 12 627 257 1828 6 6 98 88 124 4124 1770 909 919 1015 1068 1082 997 1181 1010 954 1059 1087 1113 948 1074 1005 973 1053 ]
G [ 1081 975 951 1012 1040 1123 1077 1108 1023 976 1121 1144 1097 1062 1027 908 928 827 1696 2931 476 315 318 77 81 1053 93 156 5 197 261 57 141 810 1324 1234 1061 1152 1047 1018 1055 985 1084 1097 995 1096 1117 1016 1093 1173 ]
T [ 1253 1268 1241 1309 1324 1303 1340 1242 1354 1419 1279 1215 1228 1249 1279 1378 1387 1685 1056 676 3433 3180 115 434 2491 1181 365 4422 4537 483 69 277 1856 1134 1014 1148 1302 1238 1399 1265 1249 1221 1151 1265 1257 1206 1271 1267 1295 1197 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 0.01 0.01 -0.03 -0.01 0.09 0.07 0.01 -0.00 0.07 -0.00 -0.03 0.06 0.07 -0.01 -0.01 0.02 0.01 -0.00 -0.01 ]
C [ 0.01 0.02 0.01 -0.00 -0.03 -0.00 0.01 -0.07 -0.00 -0.00 0.03 -0.06 -0.05 0.01 -0.03 -0.01 0.07 0.04 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.04 0.07 -0.00 -0.02 0.02 -0.05 -0.06 0.02 0.00 -0.01 -0.07 0.01 0.00 -0.03 -0.01 0.01 0.02 0.01 0.01 ]
T [ -0.00 0.01 0.01 -0.01 -0.01 0.06 0.06 -0.03 -0.00 0.07 0.01 0.01 0.08 0.10 -0.01 -0.03 0.01 0.02 -0.00 -0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3771

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1886

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1872

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1169

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1036

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 279

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 201

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 29

CWM

PFM

     

HCWM

1 profiles found for the same TF (HNF1A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001155.1 HNF1A ENCSR800QIT HepG2 Homo sapiens MA0046.3
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