Detailed information of deep learning profile BP001155.1

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This page shows detailed deep learning-derived predictions and motifs for HNF1A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF1A
Model ID: BP001155.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: POU domain factors
JASPAR ID: MA0046.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P20823  
Source: ENCSR800QIT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.12 0.08 0.00 -0.00 0.05 -0.00 -0.00 0.04 0.05 -0.00 -0.00 0.01 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.01 -0.00 -0.00 0.00 ]
G [ 0.00 -0.00 -0.00 0.01 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.01 -0.00 -0.00 0.08 0.06 -0.00 -0.00 0.06 -0.00 0.00 0.07 0.10 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1670 1806 1716 1782 1712 1725 1703 1608 1727 1756 1923 1873 1710 1840 1570 1375 1726 2698 185 46 487 6197 5811 1253 1461 4298 535 184 3985 4293 1021 1529 2283 1994 1864 1741 1728 1724 1776 1767 1938 1836 1686 1778 1812 1822 1795 1754 1761 1776 ]
C [ 1521 1424 1417 1429 1430 1349 1483 1399 1273 1326 1315 1354 1487 1386 1547 1718 984 164 57 200 238 10 315 253 1883 80 107 486 457 771 3558 2349 1146 1218 1243 1343 1394 1384 1458 1471 1274 1376 1497 1447 1349 1303 1361 1285 1310 1441 ]
G [ 1355 1321 1329 1420 1331 1418 1411 1376 1334 1403 1498 1414 1457 1367 1342 1253 1185 2247 5878 85 62 72 15 39 1962 236 724 22 795 751 307 562 1277 1702 1517 1466 1432 1418 1334 1356 1280 1382 1384 1365 1459 1439 1440 1453 1574 1388 ]
T [ 1763 1758 1847 1678 1836 1817 1712 1926 1975 1824 1573 1668 1655 1716 1850 1963 2414 1200 189 5978 5522 30 168 4764 1003 1695 4943 5617 1072 494 1423 1869 1603 1395 1685 1759 1755 1783 1741 1715 1817 1715 1742 1719 1689 1745 1713 1817 1664 1704 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 0.00 0.03 0.02 -0.03 0.01 0.12 0.09 0.02 0.01 0.08 0.01 -0.02 0.07 0.08 -0.00 -0.00 0.02 0.02 0.01 ]
C [ 0.01 0.01 0.02 0.01 -0.00 -0.04 0.01 0.01 -0.08 -0.00 0.00 0.03 -0.07 -0.07 0.02 -0.03 -0.01 0.07 0.04 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 0.04 0.08 -0.01 -0.04 0.01 -0.07 -0.07 0.03 -0.00 -0.00 -0.08 0.01 0.01 -0.03 0.00 0.02 0.02 0.01 ]
T [ 0.00 0.01 0.02 0.02 -0.01 -0.00 0.08 0.07 -0.03 0.01 0.08 0.01 0.03 0.08 0.11 0.00 -0.03 0.02 0.02 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2598

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1682

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1232

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 792

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 54

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 50

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 25

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 20

CWM

PFM

     

HCWM

1 profiles found for the same TF (HNF1A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001154.1 HNF1A ENCSR633HRJ HepG2 Homo sapiens MA0046.3
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