Detailed information of deep learning profile BP001154.1

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This page shows detailed deep learning-derived predictions and motifs for HNF1A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF1A
Model ID: BP001154.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: POU domain factors
JASPAR ID: MA0046.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P20823  
Source: ENCSR633HRJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.09 0.07 0.00 -0.00 0.03 -0.00 -0.00 0.04 0.05 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.04 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 0.06 0.05 -0.00 -0.00 0.06 -0.00 0.00 0.05 0.08 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1197 1295 1267 1271 1206 1257 1265 1151 1221 1249 1265 1399 1238 1302 1148 1014 1134 1856 277 69 483 4537 4422 365 1181 2491 434 115 3180 3433 676 1056 1685 1387 1378 1279 1249 1228 1215 1279 1419 1354 1242 1340 1303 1324 1309 1241 1268 1253 ]
C [ 1173 1093 1016 1117 1096 995 1097 1084 985 1055 1018 1047 1152 1061 1234 1324 810 141 57 261 197 5 156 93 1053 81 77 318 315 476 2931 1696 827 928 908 1027 1062 1097 1144 1121 976 1023 1108 1077 1123 1040 1012 951 975 1081 ]
G [ 1053 973 1005 1074 948 1113 1087 1059 954 1010 1181 997 1082 1068 1015 919 909 1770 4124 124 88 98 6 6 1828 257 627 12 542 447 199 395 872 1260 1117 1078 1067 1067 968 990 975 1061 1063 1018 1049 1084 1164 1070 1178 1065 ]
T [ 1247 1309 1382 1208 1420 1305 1221 1376 1510 1356 1206 1227 1198 1239 1273 1413 1817 903 212 4216 3902 30 86 4206 608 1841 3532 4225 633 314 864 1523 1286 1095 1267 1286 1292 1278 1343 1280 1300 1232 1257 1235 1195 1222 1185 1408 1249 1271 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.01 -0.00 0.02 0.01 -0.03 -0.01 0.10 0.08 0.01 0.01 0.07 -0.00 -0.03 0.06 0.06 -0.01 -0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.01 0.02 0.01 -0.01 -0.03 0.00 0.01 -0.07 -0.01 0.00 0.02 -0.06 -0.05 0.02 -0.02 -0.00 0.07 0.04 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.00 0.01 0.04 0.07 -0.01 -0.03 0.01 -0.05 -0.06 0.03 -0.00 -0.00 -0.07 0.01 -0.00 -0.03 -0.00 0.01 0.02 0.01 ]
T [ -0.01 -0.00 0.01 0.02 -0.01 -0.01 0.07 0.06 -0.03 -0.00 0.07 -0.00 0.01 0.07 0.09 -0.01 -0.03 0.01 0.01 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3771

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1886

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1872

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1169

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1036

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 279

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 201

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 29

CWM

PFM

     

HCWM

1 profiles found for the same TF (HNF1A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001155.1 HNF1A ENCSR800QIT HepG2 Homo sapiens MA0046.3
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