Detailed information of deep learning profile BP001127.1

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This page shows detailed deep learning-derived predictions and motifs for FOXP4 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXP4
Model ID: BP001127.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA2117.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8IVH2  
Source: ENCSR232LLP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.00 -0.00 0.04 0.04 0.05 0.00 0.04 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.01 0.00 0.00 0.00 0.05 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3096 2985 3055 3073 3183 3064 3025 3145 3157 2914 3033 3304 3022 2880 2810 3048 2897 4705 5293 5144 2814 209 9625 10554 10819 3 10690 4520 4657 2998 3676 3399 3224 2989 3355 3239 3263 3153 3425 3422 3111 2990 3045 3019 3149 3286 3298 3015 2982 3027 ]
C [ 2454 2362 2339 2396 2339 2485 2509 2433 2483 2534 2561 2577 2412 2544 3050 2917 3396 1182 1362 325 178 3800 1203 271 1 10551 10 1668 1635 2761 2796 2529 2134 2486 2298 2302 2247 2374 2335 2459 2385 2476 2571 2665 2469 2400 2395 2569 2376 2416 ]
G [ 2470 2572 2345 2565 2625 2368 2459 2413 2340 2394 2273 2367 2408 2379 2380 2917 2046 704 3063 2220 7505 32 12 7 12 0 15 2617 2096 2863 2263 2410 2601 2535 2467 2609 2574 2714 2293 2254 2612 2538 2467 2395 2596 2445 2423 2477 2403 2652 ]
T [ 2834 2935 3115 2820 2707 2937 2861 2863 2874 3012 2987 2606 3012 3051 2614 1972 2515 4263 1136 3165 357 6813 14 22 22 300 139 2049 2466 2232 2119 2516 2895 2844 2734 2704 2770 2613 2801 2719 2746 2850 2771 2775 2640 2723 2738 2793 3093 2759 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 0.01 0.01 -0.01 0.04 0.04 0.05 -0.03 0.04 0.01 0.00 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.00 -0.00 0.03 0.02 0.01 -0.02 0.05 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 -0.00 0.02 0.01 0.03 -0.02 -0.03 -0.03 -0.01 -0.02 -0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 0.01 -0.00 0.01 -0.00 0.04 -0.02 -0.01 -0.01 0.02 -0.01 -0.00 0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1774

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1739

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1716

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1341

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 778

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 253

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 54

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 36

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 36

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 33

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 32

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 23

CWM

PFM

     

HCWM

1 profiles found for the same TF (FOXP4) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001128.1 FOXP4 ENCSR507RVF WTC11 Homo sapiens MA2117.1
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