Detailed information of deep learning profile BP001115.1

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This page shows detailed deep learning-derived predictions and motifs for SOX13 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SOX13
Model ID: BP001115.1
Cell line/tissue: HepG2
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
JASPAR ID: MA1120.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9UN79  
Source: ENCSR715UCI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.02 0.05 0.00 0.07 0.06 0.01 0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1295 1433 1273 1187 1335 1268 1468 1207 1380 1539 1407 1381 1267 1546 1220 2167 1644 3452 4539 0 4610 4609 2191 1179 878 1368 1232 1029 985 1035 876 860 890 1227 1176 1214 1110 1257 1229 1369 1228 1158 1170 1332 1272 1392 1221 1250 1325 1317 ]
C [ 1152 1027 928 1194 1034 1004 937 1014 982 970 1121 1210 1296 932 981 533 320 245 1 4601 0 0 4 26 539 1140 1480 1154 1277 1108 721 739 870 840 909 1028 1241 1183 1076 976 1019 923 1169 1021 965 991 930 986 1014 1080 ]
G [ 1022 928 1244 1076 975 1172 925 1099 1078 1092 959 839 1005 982 1524 903 2294 817 2 1 0 0 6 3347 3124 1403 782 899 935 779 968 1114 924 1051 929 904 932 1019 1015 1088 1227 1316 1087 1036 1203 1119 1215 1182 1057 1073 ]
T [ 1141 1222 1165 1153 1266 1166 1280 1290 1170 1009 1123 1180 1042 1150 885 1007 352 96 68 8 0 1 2409 58 69 699 1116 1528 1413 1688 2045 1897 1926 1492 1596 1464 1327 1151 1290 1177 1136 1213 1184 1221 1170 1108 1244 1192 1214 1140 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.01 0.01 0.02 0.05 -0.03 0.07 0.06 0.02 0.01 0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.02 0.01 0.01 0.01 0.01 0.01 -0.03 0.08 -0.03 -0.01 -0.01 -0.00 0.01 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.01 0.02 0.01 -0.02 -0.02 -0.02 -0.01 -0.02 0.03 0.03 0.02 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.00 -0.01 -0.01 0.01 0.01 -0.03 -0.02 0.03 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4515

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3985

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 3759

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 2071

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1891

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 1198

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 1171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 980

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 965

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 871

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 688

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 444

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 204

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 59

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 47

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 46

CWM

PFM

     

HCWM

1 profiles found for the same TF (SOX13) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001114.1 SOX13 ENCSR445ACU HepG2 Homo sapiens MA1120.2
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