Detailed information of deep learning profile BP001114.1

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This page shows detailed deep learning-derived predictions and motifs for SOX13 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SOX13
Model ID: BP001114.1
Cell line/tissue: HepG2
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
JASPAR ID: MA1120.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9UN79  
Source: ENCSR445ACU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 -0.00 0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.05 0.00 -0.00 0.00 0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 0.04 0.00 0.02 0.01 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 992 965 974 933 929 1016 968 965 998 961 961 935 1078 1086 1114 1162 1195 1400 1439 1319 1110 1025 962 518 118 110 2028 5 0 0 130 125 346 791 767 944 894 987 902 863 925 960 1031 959 1011 1011 1011 972 951 975 ]
C [ 841 896 904 889 865 820 874 947 906 915 836 808 760 747 808 775 974 881 775 695 766 833 700 1158 2347 2617 18 3 0 0 13 815 1526 813 1232 891 829 723 753 914 861 918 830 881 791 885 851 875 889 894 ]
G [ 834 826 817 842 816 853 886 788 779 870 874 900 866 901 806 776 678 612 661 795 894 963 981 987 516 54 11 3 0 3694 0 206 351 520 765 790 999 901 966 871 896 852 793 815 906 857 818 809 820 824 ]
T [ 1027 1007 999 1030 1084 1005 966 994 1011 948 1023 1051 990 960 966 981 847 801 819 885 924 873 1051 1031 713 913 1637 3683 3694 0 3551 2548 1471 1570 930 1069 972 1083 1073 1046 1012 964 1040 1039 986 941 1014 1038 1034 1001 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.02 -0.01 -0.03 0.00 0.01 -0.01 -0.01 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.02 0.02 -0.02 -0.02 -0.01 -0.02 -0.02 0.00 0.01 -0.00 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 0.01 0.00 -0.01 -0.01 -0.03 0.05 -0.02 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.03 0.04 -0.03 0.03 0.01 0.00 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1953

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1808

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1792

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1498

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 604

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 463

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 400

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 28

CWM

PFM

     

HCWM

1 profiles found for the same TF (SOX13) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001115.1 SOX13 ENCSR715UCI HepG2 Homo sapiens MA1120.2
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