Detailed information of deep learning profile BP001115.1

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This page shows detailed deep learning-derived predictions and motifs for SOX13 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SOX13
Model ID: BP001115.1
Cell line/tissue: HepG2
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
JASPAR ID: MA1120.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9UN79  
Source: ENCSR715UCI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.02 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.08 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.00 0.01 0.06 0.07 0.00 0.05 0.02 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1140 1214 1192 1244 1108 1170 1221 1184 1213 1136 1177 1290 1151 1327 1464 1596 1492 1926 1897 2045 1688 1413 1528 1116 699 69 58 2409 1 0 8 68 96 352 1007 885 1150 1042 1180 1123 1009 1170 1290 1280 1166 1266 1153 1165 1222 1141 ]
C [ 1073 1057 1182 1215 1119 1203 1036 1087 1316 1227 1088 1015 1019 932 904 929 1051 924 1114 968 779 935 899 782 1403 3124 3347 6 0 0 1 2 817 2294 903 1524 982 1005 839 959 1092 1078 1099 925 1172 975 1076 1244 928 1022 ]
G [ 1080 1014 986 930 991 965 1021 1169 923 1019 976 1076 1183 1241 1028 909 840 870 739 721 1108 1277 1154 1480 1140 539 26 4 0 0 4601 1 245 320 533 981 932 1296 1210 1121 970 982 1014 937 1004 1034 1194 928 1027 1152 ]
T [ 1317 1325 1250 1221 1392 1272 1332 1170 1158 1228 1369 1229 1257 1110 1214 1176 1227 890 860 876 1035 985 1029 1232 1368 878 1179 2191 4609 4610 0 4539 3452 1644 2167 1220 1546 1267 1381 1407 1539 1380 1207 1468 1268 1335 1187 1273 1433 1295 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.03 -0.02 -0.03 0.01 0.01 -0.01 -0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.02 0.03 0.03 -0.02 -0.01 -0.02 -0.02 -0.02 0.01 0.02 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.01 -0.00 -0.01 -0.01 -0.03 0.08 -0.03 0.01 0.01 0.01 0.01 0.01 0.02 ]
T [ -0.00 -0.00 -0.00 0.00 0.01 0.01 0.02 0.06 0.07 -0.03 0.05 0.02 0.01 0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4515

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3985

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 3759

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 2071

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1891

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 1198

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 1171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 980

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 965

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 871

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 688

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 444

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 204

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 65

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_20

Num. of seqlets: 59

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 47

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 46

CWM

PFM

     

HCWM

1 profiles found for the same TF (SOX13) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001114.1 SOX13 ENCSR445ACU HepG2 Homo sapiens MA1120.2
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