Detailed information of deep learning profile BP001114.1

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This page shows detailed deep learning-derived predictions and motifs for SOX13 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SOX13
Model ID: BP001114.1
Cell line/tissue: HepG2
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
JASPAR ID: MA1120.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9UN79  
Source: ENCSR445ACU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 0.02 0.00 0.04 0.03 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 0.00 0.00 -0.00 0.00 0.05 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 -0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1001 1034 1038 1014 941 986 1039 1040 964 1012 1046 1073 1083 972 1069 930 1570 1471 2548 3551 0 3694 3683 1637 913 713 1031 1051 873 924 885 819 801 847 981 966 960 990 1051 1023 948 1011 994 966 1005 1084 1030 999 1007 1027 ]
C [ 824 820 809 818 857 906 815 793 852 896 871 966 901 999 790 765 520 351 206 0 3694 0 3 11 54 516 987 981 963 894 795 661 612 678 776 806 901 866 900 874 870 779 788 886 853 816 842 817 826 834 ]
G [ 894 889 875 851 885 791 881 830 918 861 914 753 723 829 891 1232 813 1526 815 13 0 0 3 18 2617 2347 1158 700 833 766 695 775 881 974 775 808 747 760 808 836 915 906 947 874 820 865 889 904 896 841 ]
T [ 975 951 972 1011 1011 1011 959 1031 960 925 863 902 987 894 944 767 791 346 125 130 0 0 5 2028 110 118 518 962 1025 1110 1319 1439 1400 1195 1162 1114 1086 1078 935 961 961 998 965 968 1016 929 933 974 965 992 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 0.00 0.01 0.03 -0.03 0.04 0.03 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.02 0.05 -0.03 -0.01 -0.01 0.00 0.01 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 -0.00 0.01 0.00 -0.02 -0.02 -0.01 -0.02 -0.02 0.02 0.02 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.01 -0.01 0.01 0.00 -0.03 -0.01 0.02 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1953

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1808

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1792

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1498

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 604

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 463

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 400

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 28

CWM

PFM

     

HCWM

1 profiles found for the same TF (SOX13) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001115.1 SOX13 ENCSR715UCI HepG2 Homo sapiens MA1120.2
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